C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox transcription factor 1, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355497 LMX1B-201 ENSG00000136944 9606 + 9:126614443-126701032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000355497
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000355497 0.126±0.00 0.060±0.00 0.059±0.00 0.020±0.00 0.123±0.00 0.059±0.00 0.770±0.00 0.011±0.00 0.019±0.00 0.042±0.00 0.020±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X9 CIL_0007X9_0001 VISTA 9:126036032-126639702
CIL_0008M0 CIL_0008M0_0001 VISTA 9:126136121-126738460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 NAS in utero embryonic development
GO:0001764 IEA neuron migration
GO:0002930 IEA trabecular meshwork development
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007275 NAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0008283 IEA cell proliferation
GO:0009953 ISS dorsal/ventral pattern formation
GO:0010468 IEA regulation of gene expression
GO:0021587 IEA cerebellum morphogenesis
GO:0021954 IEA central nervous system neuron development
GO:0030182 ISS neuron differentiation
GO:0030199 IEA collagen fibril organization
GO:0030901 IEA midbrain development
GO:0035108 IEA limb morphogenesis
GO:0035265 IEA organ growth
GO:0043010 IEA camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0071542 IEA dopaminergic neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041730 Lmx1b-001 protein_coding Mus_musculus 0 1212
ENSMUST00000176067 Lmx1b-003 protein_coding Mus_musculus 0 1155
ENSMUST00000137559 Lmx1b-002 processed_transcript Mus_musculus 0 538

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