C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007X9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm716 VISTA 9606 9:126036032-126639702
GeneTranscriptPositionBiotype
ENSG00000136944 (LMX1B)
LIM homeobox transcription factor 1, beta 		ENST00000355497 (LMX1B-201) 126614443-126701032 protein_coding
ENST00000373474 (LMX1B-002) 126614443-126696549 protein_coding
ENST00000526117 (LMX1B-001) 126614443-126696451 protein_coding
ENST00000561065 (LMX1B-003) 126614469-126696549 protein_coding
ENSG00000196814 (MVB12B)
multivesicular body subunit 12B 		ENST00000361171 (MVB12B-001) 126326849-126507041 protein_coding
ENST00000402437 (MVB12B-004) 126335219-126395697 protein_coding
ENST00000470567 (MVB12B-006) 126395640-126448409 processed_transcript
ENST00000485886 (MVB12B-003) 126480813-126507041 processed_transcript
ENST00000489570 (MVB12B-005) 126421854-126448409 processed_transcript
ENST00000489637 (MVB12B-002) 126326862-126397633 processed_transcript
ENSG00000224842 (RP11-123K19.1)
 ENST00000425370 (RP11-123K19.1-001) 126608278-126613699 antisense
ENST00000432418 (RP11-123K19.1-003) 126608113-126612519 antisense
ENST00000451449 (RP11-123K19.1-002) 126589594-126613700 antisense
ENSG00000228392 (RP11-343J18.1)
 ENST00000419853 (RP11-343J18.1-001) 126270121-126275918 lincRNA
ENSG00000233721 (RP11-205K6.1)
 ENST00000454034 (RP11-205K6.1-001) 126516417-126518808 lincRNA
ENSG00000253079 (NRON)
non-protein coding RNA, repressor of NFAT 		ENST00000517270 (NRON-201) 126408041-126408410 misc_RNA
ENSG00000279137 (RP11-205K6.3)
 ENST00000624132 (RP11-205K6.3-001) 126518840-126520773 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007X9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm716 VISTA 10090 2:33575330-34178839
GeneTranscriptPositionBiotype
ENSMUSG00000038718 (Pbx3)
pre B cell leukemia homeobox 3 		ENSMUST00000040638 (Pbx3-001) 34171723-34372044 protein_coding
ENSMUST00000113132 (Pbx3-002) 34171457-34372038 protein_coding
ENSMUST00000127353 (Pbx3-008) 34224534-34371150 protein_coding
ENSMUST00000138021 (Pbx3-007) 34213400-34373142 protein_coding
ENSMUST00000141653 (Pbx3-009) 34224407-34371253 protein_coding
ENSMUST00000143776 (Pbx3-004) 34172881-34371920 nonsense_mediated_decay
ENSMUST00000153278 (Pbx3-003) 34172881-34371920 nonsense_mediated_decay
ENSMUST00000155423 (Pbx3-005) 34368112-34371792 retained_intron
ENSMUST00000175855 (Pbx3-006) 34176859-34370846 nonsense_mediated_decay
ENSMUST00000176213 (Pbx3-010) 34172873-34288852 processed_transcript
ENSMUSG00000038740 (Mvb12b)
multivesicular body subunit 12B 		ENSMUST00000041555 (Mvb12b-001) 33729953-33887946 protein_coding
ENSMUST00000146892 (Mvb12b-003) 33873614-33887482 processed_transcript
ENSMUST00000148660 (Mvb12b-002) 33825048-33886845 protein_coding
ENSMUSG00000038765 (Lmx1b)
LIM homeobox transcription factor 1 beta 		ENSMUST00000041730 (Lmx1b-001) 33560965-33640511 protein_coding
ENSMUST00000137559 (Lmx1b-002) 33567156-33632283 processed_transcript
ENSMUST00000176067 (Lmx1b-003) 33564325-33640480 protein_coding
ENSMUSG00000052951 (C130021I20Rik)
Riken cDNA C130021I20 gene 		ENSMUST00000147294 (C130021I20Rik-001) 33641331-33646354 antisense
ENSMUST00000152118 (C130021I20Rik-002) 33641193-33642593 antisense
ENSMUSG00000081244 (Gm13529)
predicted gene 13529 		ENSMUST00000121118 (Gm13529-001) 33652389-33652798 processed_pseudogene
ENSMUSG00000085463 (9430024E24Rik)
RIKEN cDNA 9430024E24 gene 		ENSMUST00000130532 (9430024E24Rik-001) 33716361-33718899 lincRNA
ENSMUSG00000085987 (Gm13403)
predicted gene 13403 		ENSMUST00000127936 (Gm13403-001) 33935788-33942113 lincRNA
ENSMUST00000130988 (Gm13403-003) 33938758-33942111 lincRNA
ENSMUST00000134271 (Gm13403-002) 33937895-33942145 lincRNA
ENSMUSG00000086484 (Nron)
non-protein coding RNA, repressor of NFAT 		ENSMUST00000140412 (Nron-003) 33805859-33811438 antisense
ENSMUST00000151761 (Nron-002) 33805828-33812455 antisense
ENSMUST00000156297 (Nron-001) 33805816-33813591 antisense
ENSMUSG00000086904 (Gm13404)
predicted gene 13404 		ENSMUST00000156633 (Gm13404-001) 33978246-33980324 lincRNA
ENSMUSG00000087461 (C230014O12Rik)
RIKEN cDNA C230014O12 gene 		ENSMUST00000134921 (C230014O12Rik-001) 34018289-34107729 lincRNA
ENSMUST00000147871 (C230014O12Rik-003) 34097397-34111444 lincRNA
ENSMUST00000149707 (C230014O12Rik-002) 34100044-34107735 lincRNA
ENSMUSG00000089596 (Nron)
non-protein coding RNA, repressor of NFAT 		ENSMUST00000158971 (Nron-201) 33812957-33813326 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007X9_0001ENSG00000136944ENST00000355497ENST00000373474ENST00000526117ENST00000561065ENSG00000196814ENST00000361171ENST00000402437ENST00000470567ENST00000485886ENST00000489570ENST00000489637ENSG00000224842ENST00000425370ENST00000432418ENST00000451449ENSG00000228392ENST00000419853ENSG00000233721ENST00000454034ENSG00000253079ENST00000517270ENSG00000279137ENST00000624132CIL_0007X9_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007X9_0001ENSG00000136944ENST00000355497ENST00000373474ENST00000526117ENST00000561065ENSG00000196814ENST00000361171ENST00000402437ENST00000485886ENST00000489637ENSG00000224842ENST00000425370ENST00000432418ENST00000451449ENSG00000228392ENST00000419853ENSG00000233721ENST00000454034ENSG00000253079ENST00000517270ENSG00000279137ENST00000624132CIL_0007X9_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136944 ENST00000355497 0.126±0.00 0.060±0.00 N/A 0.059±0.00 0.020±0.00 0.123±0.00 0.059±0.00 0.770±0.00 0.011±0.00 0.019±0.00 N/A 0.042±0.00 0.020±0.01 N/A
ENST00000373474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.580±0.24 N/A N/A
ENST00000526117 0.396±0.00 N/A N/A N/A 0.165±0.00 0.235±0.00 N/A N/A N/A 0.159±0.00 N/A 0.349±0.14 N/A 1.855±0.00
ENST00000561065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.499±0.00 N/A N/A
ENSG00000196814 ENST00000361171 2.678±0.00 4.582±0.00 0.624±0.00 10.082±7.03 1.546±1.25 1.703±0.56 1.655±1.41 1.657±0.00 1.183±0.67 1.960±0.28 5.101±0.00 6.916±3.97 11.618±1.66 4.778±1.38
ENST00000402437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.217±0.00 N/A 7.407±0.00
ENST00000470567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485886 N/A N/A N/A N/A 0.304±0.00 N/A N/A N/A N/A 0.515±0.00 N/A 0.755±0.00 N/A N/A
ENST00000489570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489637 N/A N/A N/A N/A 0.253±0.00 0.546±0.00 N/A 0.347±0.00 0.499±0.00 N/A N/A N/A N/A N/A
ENSG00000224842 ENST00000425370 0.185±0.00 N/A N/A N/A N/A N/A 0.439±0.00 N/A N/A N/A N/A 0.495±0.00 N/A 0.729±0.00
ENST00000432418 N/A N/A N/A N/A 0.469±0.00 0.194±0.00 0.038±0.00 N/A N/A N/A N/A 0.332±0.00 N/A 0.113±0.00
ENST00000451449 N/A 0.246±0.00 N/A N/A 0.206±0.00 0.093±0.00 N/A N/A N/A 0.045±0.00 N/A N/A N/A 0.138±0.04
ENSG00000228392 ENST00000419853 N/A 0.006±0.00 N/A 0.221±0.00 0.039±0.00 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.038±0.00
ENSG00000233721 ENST00000454034 N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 0.234±0.12
ENSG00000253079 ENST00000517270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A
ENSG00000279137 ENST00000624132 0.037±0.00 0.022±0.00 N/A 0.105±0.00 0.007±0.00 0.062±0.00 N/A N/A N/A N/A N/A 0.015±0.00 N/A 0.222±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038718 ENSMUST00000040638 1.910±0.30 21.974±1.24 4.560±0.34 15.548±13.43 1.103±0.51 3.897±1.40 1.643±0.27 1.674±0.65 1.977±1.95 4.461±1.42 0.222±0.07 3.644±2.03 0.536±0.09 2.028±0.36
ENSMUST00000113132 0.784±0.50 17.744±0.00 1.727±0.52 22.387±16.78 0.215±0.00 3.087±0.00 0.652±0.10 1.274±0.49 1.364±1.26 1.653±0.80 0.358±0.13 2.953±0.98 0.854±0.43 0.583±0.15
ENSMUST00000127353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143776 N/A N/A N/A N/A 1.271±0.00 N/A N/A N/A 0.407±0.00 N/A N/A N/A N/A 1.015±0.59
ENSMUST00000153278 N/A N/A N/A N/A N/A N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A
ENSMUST00000155423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176213 N/A N/A N/A 1.844±0.00 N/A N/A N/A N/A N/A N/A N/A 2.630±0.00 N/A 1.074±0.00
ENSMUSG00000038740 ENSMUST00000041555 N/A 1.707±0.00 1.456±0.02 10.392±3.51 1.301±0.00 N/A 0.832±0.00 1.283±0.13 0.539±0.23 N/A 2.317±0.79 2.525±0.75 1.104±0.13 0.463±0.21
ENSMUST00000146892 N/A 18.333±4.19 N/A N/A 9.686±0.00 N/A N/A N/A 0.633±0.00 N/A N/A N/A N/A N/A
ENSMUST00000148660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.481±0.00
ENSMUSG00000038765 ENSMUST00000041730 0.006±0.00 0.010±0.00 0.035±0.00 1.795±2.23 2.981±1.38 0.035±0.02 0.020±0.00 0.403±0.19 0.017±0.02 0.052±0.00 0.040±0.01 0.018±0.01 0.223±0.27 0.048±0.02
ENSMUST00000137559 N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A 0.042±0.00 N/A N/A N/A 0.636±0.00 N/A
ENSMUST00000176067 N/A 0.020±0.00 N/A 0.155±0.00 N/A 0.075±0.02 0.086±0.00 N/A 0.014±0.01 N/A 0.053±0.00 N/A 0.203±0.13 N/A
ENSMUSG00000052951 ENSMUST00000147294 0.013±0.00 0.032±0.02 0.034±0.00 2.666±2.81 6.188±2.29 0.173±0.09 0.030±0.01 0.557±0.26 0.012±0.02 0.190±0.02 0.030±0.02 0.019±0.00 0.129±0.07 0.008±0.00
ENSMUST00000152118 N/A N/A N/A N/A N/A 0.294±0.09 0.055±0.00 0.536±0.00 N/A 0.228±0.08 0.129±0.00 N/A N/A N/A
ENSMUSG00000081244 ENSMUST00000121118 0.175±0.00 N/A 0.100±0.03 0.053±0.01 N/A N/A N/A 0.122±0.00 0.119±0.08 N/A N/A 0.376±0.00 N/A 0.147±0.01
ENSMUSG00000085463 ENSMUST00000130532 N/A N/A N/A N/A N/A 0.253±0.09 N/A N/A 0.020±0.01 N/A 0.065±0.00 N/A 0.017±0.00 0.084±0.02
ENSMUSG00000085987 ENSMUST00000127936 N/A N/A N/A 0.011±0.00 0.026±0.00 0.035±0.01 0.009±0.00 N/A 0.003±0.00 0.013±0.00 0.009±0.00 N/A N/A N/A
ENSMUST00000130988 N/A 0.171±0.06 N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A 0.308±0.00 N/A N/A
ENSMUST00000134271 0.057±0.00 N/A N/A 0.050±0.00 0.165±0.02 N/A 0.122±0.02 0.050±0.00 N/A 0.060±0.00 0.129±0.00 0.233±0.00 N/A N/A
ENSMUSG00000086484 ENSMUST00000140412 N/A 0.135±0.00 N/A 0.125±0.00 0.178±0.08 0.183±0.03 0.050±0.00 N/A 0.041±0.02 0.160±0.04 N/A 0.174±0.03 0.045±0.00 0.032±0.00
ENSMUST00000151761 0.045±0.03 0.105±0.05 N/A 0.087±0.05 N/A 0.026±0.00 0.034±0.00 0.027±0.01 0.033±0.02 0.041±0.01 N/A 0.066±0.04 N/A 0.013±0.00
ENSMUST00000156297 0.039±0.00 N/A 0.011±0.00 0.058±0.00 0.024±0.01 0.038±0.00 N/A 0.022±0.01 0.015±0.01 0.047±0.01 N/A 0.009±0.00 N/A 0.016±0.01
ENSMUSG00000086904 ENSMUST00000156633 0.075±0.03 0.055±0.00 0.043±0.00 0.661±0.46 0.037±0.00 N/A 0.045±0.01 0.108±0.03 0.017±0.01 0.052±0.02 0.015±0.00 0.164±0.09 0.011±0.00 0.264±0.20
ENSMUSG00000087461 ENSMUST00000134921 0.014±0.00 N/A 0.274±0.10 0.403±0.13 0.066±0.03 0.028±0.00 0.010±0.00 0.021±0.01 0.009±0.01 0.349±0.06 N/A 0.060±0.05 0.011±0.01 0.027±0.02
ENSMUST00000147871 N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149707 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A 0.107±0.05 N/A N/A
ENSMUSG00000089596 ENSMUST00000158971 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A 0.123±0.00 N/A N/A

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