C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VA (heavy chain 12, myoxin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356338 MYO5A-008 ENSG00000197535 9606 - 15:52307286-52528880 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000356338
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000356338 1.489±0.00 1.372±0.00 0.875±0.00 15.733±3.36 0.478±0.10 0.378±0.00 0.118±0.00 0.870±0.00 0.191±0.00 0.131±0.00 0.627±0.17 0.185±0.00 0.588±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 NAS microfilament motor activity
GO:0001726 IDA ruffle
GO:0003774 IEA motor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005777 IDA peroxisome
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IDA cytosol
GO:0005884 IDA actin filament
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006810 NAS transport
GO:0006892 IMP post-Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016192 ISS vesicle-mediated transport
GO:0016459 IEA myosin complex
GO:0017137 IPI Rab GTPase binding
GO:0030048 NAS actin filament-based movement
GO:0030050 IMP vesicle transport along actin filament
GO:0030426 NAS growth cone
GO:0031982 IDA vesicle
GO:0032433 IDA filopodium tip
GO:0032593 ISS insulin-responsive compartment
GO:0032869 ISS cellular response to insulin stimulus
GO:0043005 NAS neuron projection
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0055037 IDA recycling endosome
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0072659 ISS protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136731 Myo5a-009 protein_coding Mus_musculus 0 7371
ENSMUST00000123128 Myo5a-001 protein_coding Mus_musculus 0 5579
ENSMUST00000155282 Myo5a-003 protein_coding Mus_musculus 0 5289
ENSMUST00000123531 Myo5a-010 nonsense_mediated_decay Mus_musculus 0 3703
ENSMUST00000136604 Myo5a-002 processed_transcript Mus_musculus 0 2795
ENSMUST00000148144 Myo5a-011 protein_coding Mus_musculus 0 2296
ENSDART00000088037 myo5aa-201 protein_coding Danio_rerio 0 1125
ENSDART00000133618 myo5aa-001 protein_coding Danio_rerio 0 1107
ENSDART00000148541 myo5aa-003 protein_coding Danio_rerio 0 1107
ENSMUST00000136871 Myo5a-006 retained_intron Mus_musculus 0 898
ENSMUST00000149032 Myo5a-012 retained_intron Mus_musculus 0 675
ENSMUST00000153404 Myo5a-004 retained_intron Mus_musculus 0 656
ENSMUST00000142181 Myo5a-008 retained_intron Mus_musculus 0 652
ENSMUST00000130384 Myo5a-013 protein_coding Mus_musculus 0 481
ENSMUST00000129281 Myo5a-007 protein_coding Mus_musculus 0 294

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