C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | chordin | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000356534  |
CHRD-003 |
ENSG00000090539 |
9606 | + |
3:184380073-184382747  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0005G3 | CIL_0005G3_0001 | CGP | 3:184135038-184684758 |
| CIL_00056V | CIL_00056V_0001 | CGP | 3:184371935-184390736 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001501 | TAS | skeletal system development |
| GO:0002053 | IMP | positive regulation of mesenchymal cell proliferation |
| GO:0005515 | IPI | protein binding |
| GO:0005615 | NAS | extracellular space |
| GO:0019955 | NAS | cytokine binding |
| GO:0021919 | IMP | BMP signaling pathway involved in spinal cord dorsal/ventral patterning |
| GO:0030336 | IDA | negative regulation of cell migration |
| GO:0030514 | IMP | negative regulation of BMP signaling pathway |
| GO:0033504 | TAS | floor plate development |
| GO:0045668 | IMP | negative regulation of osteoblast differentiation |
| GO:0045785 | IDA | positive regulation of cell adhesion |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000007171
|
Chrd-001 | protein_coding | Mus_musculus | 0 | 701 |
|
ENSMUST00000115423
|
Chrd-002 | protein_coding | Mus_musculus | 0 | 701 |
|
ENSMUST00000153299
|
Chrd-003 | nonsense_mediated_decay | Mus_musculus | 0 | 422 |
