C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chordin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090539 CHRD 9606 + 3:184380073-184390736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000204604 CHRD-001 184380073-184389829 protein_coding
  ENST00000348986 CHRD-013 184380319-184389829 protein_coding
  ENST00000356534 CHRD-003 184380073-184382747 nonsense_mediated_decay
  ENST00000420973 CHRD-004 184380073-184389829 nonsense_mediated_decay
  ENST00000448472 CHRD-002 184380073-184389829 nonsense_mediated_decay
  ENST00000450923 CHRD-014 184380207-184389829 protein_coding
  ENST00000459711 CHRD-010 184380452-184381749 retained_intron
  ENST00000460627 CHRD-005 184380073-184389829 retained_intron
  ENST00000461120 CHRD-006 184382145-184382930 retained_intron
  ENST00000461684 CHRD-008 184381019-184382034 retained_intron
  ENST00000464833 CHRD-015 184384788-184387401 retained_intron
  ENST00000470150 CHRD-016 184380321-184390736 retained_intron
  ENST00000482014 CHRD-018 184381406-184382173 retained_intron
  ENST00000482805 CHRD-011 184380992-184382042 processed_transcript
  ENST00000485883 CHRD-017 184380623-184381968 retained_intron
  ENST00000486066 CHRD-009 184381019-184381890 retained_intron
  ENST00000496527 CHRD-007 184380348-184381160 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000204604ENST00000348986ENST00000420973ENST00000448472ENST00000450923ENST00000460627ENST00000461120ENST00000464833ENST00000470150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000204604 1.280±0.00 3.176±0.00 N/A 1.899±0.44 N/A 2.550±0.00 N/A 9.090±0.00 3.946±0.00 1.080±0.00 0.576±0.00 4.998±3.16 2.540±1.08 1.345±0.00
ENST00000348986 N/A N/A N/A N/A N/A N/A 0.982±0.00 N/A N/A 1.107±0.00 0.326±0.00 N/A 1.589±0.31 0.320±0.00
ENST00000420973 1.149±0.00 N/A 0.734±0.00 1.664±0.00 N/A 0.035±0.00 0.498±0.00 N/A 6.365±0.00 N/A N/A N/A N/A 0.265±0.00
ENST00000448472 N/A N/A N/A N/A N/A 1.265±0.00 N/A N/A N/A 2.035±0.00 N/A N/A N/A N/A
ENST00000450923 N/A 4.565±0.00 N/A 0.755±0.00 2.249±1.62 N/A 0.360±0.01 2.379±1.45 0.192±0.00 0.149±0.00 N/A 3.100±1.13 0.834±0.06 1.434±0.00
ENST00000460627 0.319±0.00 0.973±0.00 N/A 1.236±0.00 N/A N/A 0.175±0.00 N/A N/A 0.786±0.00 N/A 1.256±0.20 N/A 0.129±0.00
ENST00000461120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.452±0.00 0.279±0.00 N/A N/A
ENST00000464833 N/A N/A 0.904±0.00 3.626±0.00 N/A N/A 0.429±0.00 N/A N/A N/A N/A 0.549±0.00 N/A N/A
ENST00000470150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A 0.226±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_00056V CIL_00056V_0001 CGP 3:184371935-184390736

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001649 IEA osteoblast differentiation
GO:0001702 IEA gastrulation with mouth forming second
GO:0001707 IEA mesoderm formation
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0005515 IPI:IEA protein binding
GO:0005615 NAS extracellular space
GO:0007275 IEA multicellular organismal development
GO:0007389 IEA pattern specification process
GO:0007417 IEA central nervous system development
GO:0008201 IEA heparin binding
GO:0009953 IEA dorsal/ventral pattern formation
GO:0019955 NAS cytokine binding
GO:0021919 IMP BMP signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0030336 IDA negative regulation of cell migration
GO:0030514 IMP negative regulation of BMP signaling pathway
GO:0030900 IEA forebrain development
GO:0033504 TAS floor plate development
GO:0045545 IEA syndecan binding
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045785 IDA positive regulation of cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006110 chd chordin protein_coding Danio_rerio
ENSMUSG00000006958 Chrd chordin protein_coding Mus_musculus

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