C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chordin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007171 Chrd-001 ENSMUSG00000006958 10090 + 16:20733127-20742384 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007171
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007171 6.527±1.87 14.666±2.78 7.425±0.46 5.207±2.46 4.532±1.29 3.699±0.53 0.504±0.20 2.623±0.79 2.181±1.47 1.537±0.28 1.291±0.26 3.705±1.84 0.894±0.25 0.428±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Y CIL_00056Y_0002 CGP 16:20717665-20734511
CIL_00056V CIL_00056V_0002 CGP 16:20725158-20742384

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001649 IDA osteoblast differentiation
GO:0001702 IMP gastrulation with mouth forming second
GO:0001707 IMP mesoderm formation
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0005615 IDA extracellular space
GO:0007389 IMP pattern specification process
GO:0007417 IMP central nervous system development
GO:0008201 IDA heparin binding
GO:0009953 IMP dorsal/ventral pattern formation
GO:0021919 IEA BMP signaling pathway involved in spinal cord dorsal/ventral patterning
GO:0030336 IEA negative regulation of cell migration
GO:0030514 IDA negative regulation of BMP signaling pathway
GO:0030900 IMP forebrain development
GO:0045545 IDA syndecan binding
GO:0045668 IDA negative regulation of osteoblast differentiation
GO:0045785 IEA positive regulation of cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000204604 CHRD-001 protein_coding Homo_sapiens 0 3217
ENST00000348986 CHRD-013 protein_coding Homo_sapiens 0 1657
ENST00000356534 CHRD-003 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000420973 CHRD-004 nonsense_mediated_decay Homo_sapiens 0 3175
ENST00000448472 CHRD-002 nonsense_mediated_decay Homo_sapiens 0 2798
ENST00000450923 CHRD-014 protein_coding Homo_sapiens 0 3232
ENST00000459711 CHRD-010 retained_intron Homo_sapiens 0 436
ENST00000460627 CHRD-005 retained_intron Homo_sapiens 0 1027
ENST00000461120 CHRD-006 retained_intron Homo_sapiens 0 292
ENST00000461684 CHRD-008 retained_intron Homo_sapiens 0 427
ENST00000464833 CHRD-015 retained_intron Homo_sapiens 0 374
ENST00000470150 CHRD-016 retained_intron Homo_sapiens 0 1203
ENST00000482805 CHRD-011 processed_transcript Homo_sapiens 0 425
ENST00000485883 CHRD-017 retained_intron Homo_sapiens 0 542
ENST00000486066 CHRD-009 retained_intron Homo_sapiens 0 355
ENST00000496527 CHRD-007 retained_intron Homo_sapiens 0 307

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