C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: atrophin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356654 ATN1-002 ENSG00000111676 9606 + 12:6924463-6942321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356654 24.316±0.00 9.241±0.00 3.541±0.00 7.963±4.08 11.129±5.12 16.162±11.68 2.454±1.99 12.228±0.00 1.930±0.00 13.535±8.23 6.897±4.91 35.391±31.32 18.532±5.49 6.394±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007417 TAS central nervous system development
GO:0009404 IEA toxin metabolic process
GO:0016363 IDA nuclear matrix
GO:0016477 IEA cell migration
GO:0019904 IPI protein domain specific binding
GO:0030011 IEA maintenance of cell polarity
GO:0030054 IEA cell junction
GO:0050827 IEA toxin receptor binding
GO:0051402 IDA neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088357 Atn1-001 protein_coding Mus_musculus 0 3051
ENSMUST00000129411 Atn1-003 nonsense_mediated_decay Mus_musculus 0 2719
ENSMUST00000146872 Atn1-002 protein_coding Mus_musculus 0 896
ENSMUST00000133577 Atn1-004 processed_transcript Mus_musculus 0 340

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