C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor proline/glutamine-rich
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357214 SFPQ-001 ENSG00000116560 9606 - 1:35182932-35193148 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357214
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357214 24.306±0.00 24.083±0.00 8.999±0.00 12.275±4.73 12.552±6.98 16.703±0.00 10.744±5.94 18.338±14.47 9.196±0.00 7.830±3.34 23.394±0.00 42.986±26.44 45.052±26.74 60.392±8.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000380 IMP alternative mRNA splicing, via spliceosome
GO:0000785 IDA chromatin
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0001047 ISS core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0016363 IDA nuclear matrix
GO:0042382 IDA paraspeckles
GO:0042752 ISS regulation of circadian rhythm
GO:0042754 ISS negative regulation of circadian rhythm
GO:0042826 IPI histone deacetylase binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:0070932 ISS histone H3 deacetylation
GO:1902177 IDA positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030623 Sfpq-001 protein_coding Mus_musculus 0 3417
ENSMUST00000146285 Sfpq-006 processed_transcript Mus_musculus 0 1053
ENSMUST00000140682 Sfpq-002 processed_transcript Mus_musculus 0 966
ENSMUST00000143168 Sfpq-003 processed_transcript Mus_musculus 0 708
ENSMUST00000125453 Sfpq-004 processed_transcript Mus_musculus 0 440
ENSMUST00000144630 Sfpq-005 processed_transcript Mus_musculus 0 329

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