C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030623 Sfpq-001 ENSMUSG00000028820 10090 + 4:127021324-127031236 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030623
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030623 11.518±3.80 4.977±1.69 30.620±8.02 6.750±0.86 7.539±1.77 4.622±1.00 8.561±1.29 16.351±15.77 12.627±1.77 6.065±0.00 41.062±56.37 49.174±33.05 10.794±8.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0000785 IEA chromatin
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0001047 IDA core promoter binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0016363 IEA nuclear matrix
GO:0042382 IDA paraspeckles
GO:0042752 IMP regulation of circadian rhythm
GO:0042754 IMP negative regulation of circadian rhythm
GO:0042826 IEA histone deacetylase binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:0070932 IMP histone H3 deacetylation
GO:1902177 IEA positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357214 SFPQ-001 protein_coding Homo_sapiens 0 3417
ENST00000446621 SFPQP1-001 processed_pseudogene Homo_sapiens 0 586
ENST00000460428 SFPQ-003 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000470472 SFPQ-002 nonsense_mediated_decay Homo_sapiens 0 970

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