C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359238 SNX11-003 ENSG00000002919 9606 + 17:48107585-48122743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359238
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359238 6.036±0.00 10.005±0.00 2.225±0.00 6.512±0.00 2.917±0.00 1.551±1.49 4.240±0.00 2.381±1.82 5.904±0.00 2.152±2.05 4.372±1.57 4.812±0.45 6.612±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0006886 IEA:IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016050 IMP vesicle organization
GO:0035091 IEA phosphatidylinositol binding
GO:1901981 IDA phosphatidylinositol phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107661 Snx11-001 protein_coding Mus_musculus 4e-25 121

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