C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of var1, 3-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020273 Supv3l1-001 ENSMUSG00000020079 10090 - 10:62429209-62449738 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020273
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020273 3.318±1.03 3.613±1.60 2.127±0.01 6.443±3.64 3.303±0.55 2.828±0.75 8.365±2.51 5.746±0.89 4.595±2.39 1.076±0.42 4.429±0.84 3.647±1.29 7.765±3.82 4.169±1.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842
CIL_00002A CIL_00002A_0002 CGP 10:62383137-62449738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000958 ISS mitochondrial mRNA catabolic process
GO:0000962 ISS positive regulation of mitochondrial RNA catabolic process
GO:0000965 ISS mitochondrial RNA 3'-end processing
GO:0003677 ISS DNA binding
GO:0003678 ISS DNA helicase activity
GO:0003725 ISS double-stranded RNA binding
GO:0004004 ISS ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0006200 IEA ATP catabolic process
GO:0006310 ISS DNA recombination
GO:0006401 ISS RNA catabolic process
GO:0030307 ISS positive regulation of cell growth
GO:0032508 ISS DNA duplex unwinding
GO:0034458 ISS 3'-5' RNA helicase activity
GO:0035945 ISS mitochondrial ncRNA surveillance
GO:0035946 ISS mitochondrial mRNA surveillance
GO:0042645 IEA mitochondrial nucleoid
GO:0042803 IEA protein homodimerization activity
GO:0043066 ISS negative regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045025 ISS mitochondrial degradosome
GO:0070584 ISS mitochondrion morphogenesis
GO:0070827 ISS chromatin maintenance
GO:2000827 ISS mitochondrial RNA surveillance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359655 SUPV3L1-001 protein_coding Homo_sapiens 0 2405
ENST00000422378 SUPV3L1-003 protein_coding Homo_sapiens 0 604
ENST00000471069 SUPV3L1-005 retained_intron Homo_sapiens 0 845
ENST00000478227 SUPV3L1-004 processed_transcript Homo_sapiens 0 579
ENST00000483572 SUPV3L1-002 processed_transcript Homo_sapiens 0 678
ENST00000497254 SUPV3L1-007 processed_transcript Homo_sapiens 0 521

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