C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360060 PLOD2-002 ENSG00000152952 9606 - 3:146069444-146161167 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360060
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360060 1.099±0.00 1.234±0.33 1.560±0.00 2.852±0.99 6.369±2.51 4.405±0.00 1.355±0.00 0.362±0.35 2.232±0.53 4.592±2.25 1.937±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEP response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005783 TAS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006464 TAS cellular protein modification process
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070522 Plod2-001 protein_coding Mus_musculus 0 2745
ENSMUST00000160359 Plod2-002 protein_coding Mus_musculus 0 1653
ENSMUST00000160142 Plod2-003 retained_intron Mus_musculus 0 623
ENSMUST00000161906 Plod2-004 retained_intron Mus_musculus 0 568

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