C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070522 Plod2-001 ENSMUSG00000032374 10090 + 9:92542223-92608428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070522
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070522 1.483±1.02 16.238±4.65 2.202±1.24 3.024±1.14 1.374±0.54 0.917±0.19 6.250±0.67 0.776±0.69 2.292±0.65 0.128±0.04 27.623±15.11 8.654±2.78 1.297±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057Z CIL_00057Z_0002 CGP 9:92457373-92608428
CIL_0005X5 CIL_0005X5_0002 CGP 9:92542223-94538081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016020 IEA membrane
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282903 PLOD2-001 protein_coding Homo_sapiens 0 1653
ENST00000360060 PLOD2-002 protein_coding Homo_sapiens 0 2745
ENST00000460520 PLOD2-008 retained_intron Homo_sapiens 0 521
ENST00000461497 PLOD2-005 protein_coding Homo_sapiens 0 1094
ENST00000469350 PLOD2-006 protein_coding Homo_sapiens 0 732
ENST00000475505 PLOD2-009 retained_intron Homo_sapiens 0 222
ENST00000478436 PLOD2-004 retained_intron Homo_sapiens 0 523
ENST00000494950 PLOD2-003 protein_coding Homo_sapiens 0 1644
ENST00000495700 PLOD2-010 retained_intron Homo_sapiens 0 558

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