C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160359 Plod2-002 ENSMUSG00000032374 10090 + 9:92542264-92608420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160359 8.794±7.16 62.420±12.51 13.154±2.40 0.982±0.51 1.496±0.32 3.720±0.69 3.632±0.73 1.329±0.28 0.552±0.42 9.028±0.55 0.337±0.16 39.142±26.20 8.049±5.83 0.667±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057Z CIL_00057Z_0002 CGP 9:92457373-92608428
CIL_0005X5 CIL_0005X5_0002 CGP 9:92542223-94538081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282903 PLOD2-001 protein_coding Homo_sapiens 0 2856
ENST00000360060 PLOD2-002 protein_coding Homo_sapiens 0 1653
ENST00000460520 PLOD2-008 retained_intron Homo_sapiens 0 521
ENST00000461497 PLOD2-005 protein_coding Homo_sapiens 0 1725
ENST00000469350 PLOD2-006 protein_coding Homo_sapiens 0 732
ENST00000475505 PLOD2-009 retained_intron Homo_sapiens 0 222
ENST00000478436 PLOD2-004 retained_intron Homo_sapiens 0 636
ENST00000494950 PLOD2-003 protein_coding Homo_sapiens 0 2846
ENST00000495700 PLOD2-010 retained_intron Homo_sapiens 0 558

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