C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opsin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366554 OPN3-001 ENSG00000054277 9606 - 1:241593124-241640361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000366554
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000366554 1.005±0.00 1.505±0.00 3.780±0.18 1.388±0.00 1.093±0.11 0.477±0.35 4.431±1.02 3.583±0.00 2.368±0.39 1.713±0.97 13.476±2.96 1.517±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HM CIL_0000HM_0001 CGP 1:241497603-241595642
CIL_0000I7 CIL_0000I7_0001 CGP 1:241532134-241677376
CIL_0003AP CIL_0003AP_0001 CGP 1:241590102-241677376

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004930 TAS:IEA G-protein coupled receptor activity
GO:0005887 TAS integral component of plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007602 NAS phototransduction
GO:0008020 NAS G-protein coupled photoreceptor activity
GO:0009583 NAS detection of light stimulus
GO:0009584 NAS detection of visible light
GO:0009881 NAS photoreceptor activity
GO:0016021 NAS:IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage
GO:0042752 NAS regulation of circadian rhythm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027809 Opn3-001 protein_coding Mus_musculus 0 1271

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