C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000HM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000091483-ENSG00000117009 CGP 9606 1:241497603-241595642
GeneTranscriptPositionBiotype
ENSG00000054277 (OPN3)
opsin 3
ENST00000366554 (OPN3-001) 241593124-241640361 protein_coding
ENST00000462265 (OPN3-006) 241590102-241601178 processed_transcript
ENST00000463155 (OPN3-005) 241594212-241677376 processed_transcript
ENST00000469376 (OPN3-002) 241593602-241640340 processed_transcript
ENST00000478849 (OPN3-004) 241594598-241640210 processed_transcript
ENST00000490673 (OPN3-003) 241593602-241640355 processed_transcript
ENSG00000091483 (FH)
fumarate hydratase
ENST00000366560 (FH-001) 241497603-241519761 protein_coding
ENST00000493477 (FH-003) 241513680-241519304 processed_transcript
ENST00000497042 (FH-002) 241511867-241513676 processed_transcript
CIL_0000HM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026526-ENSMUSG00000039783 CGP 10090 1:175600374-175662116
GeneTranscriptPositionBiotype
ENSMUSG00000026526 (Fh1)
fumarate hydratase 1
ENSMUST00000027810 (Fh1-001) 175600374-175625635 protein_coding
ENSMUST00000130996 (Fh1-004) 175601376-175604285 retained_intron
ENSMUST00000133218 (Fh1-003) 175601378-175606647 retained_intron
ENSMUST00000154956 (Fh1-002) 175614776-175625573 nonsense_mediated_decay
ENSMUST00000176740 (Fh1-005) 175601384-175609713 protein_coding
ENSMUSG00000039783 (Kmo)
kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
ENSMUST00000040250 (Kmo-001) 175631996-175660853 protein_coding
ENSMUST00000097458 (Kmo-004) 175632180-175662116 protein_coding
ENSMUST00000137174 (Kmo-006) 175632239-175649265 processed_transcript
ENSMUST00000140474 (Kmo-002) 175620381-175659962 nonsense_mediated_decay
ENSMUST00000142223 (Kmo-003) 175632001-175654098 retained_intron
ENSMUST00000150646 (Kmo-005) 175632026-175637565 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000HM_0001ENSG00000054277ENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673ENSG00000091483ENST00000366560ENST00000493477ENST00000497042CIL_0000HM_0002ENSMUSG00000026526ENSMUST00000027810ENSMUST00000130996ENSMUST00000133218ENSMUST00000154956ENSMUST00000176740ENSMUSG00000039783ENSMUST00000040250ENSMUST00000097458ENSMUST00000137174ENSMUST00000140474ENSMUST00000142223ENSMUST00000150646
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000HM_0001ENSG00000054277ENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673ENSG00000091483ENST00000366560ENST00000497042CIL_0000HM_0002ENSMUSG00000026526ENSMUST00000027810ENSMUST00000154956ENSMUST00000176740ENSMUSG00000039783ENSMUST00000040250ENSMUST00000097458ENSMUST00000140474ENSMUST00000142223ENSMUST00000150646
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054277 ENST00000366554 1.005±0.00 1.505±0.00 N/A 3.780±0.18 1.388±0.00 1.093±0.11 0.477±0.35 4.431±1.02 3.583±0.00 2.368±0.39 N/A 1.713±0.97 13.476±2.96 1.517±0.62
ENST00000462265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.350±0.00
ENST00000463155 N/A N/A N/A N/A N/A 1.257±0.00 0.395±0.00 N/A N/A N/A 1.557±0.00 N/A N/A N/A
ENST00000469376 N/A N/A N/A N/A 1.521±0.00 0.861±0.00 0.595±0.00 N/A N/A 5.232±0.00 0.415±0.00 N/A 8.992±0.47 N/A
ENST00000478849 N/A N/A N/A N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A N/A N/A
ENST00000490673 3.052±0.00 2.536±0.00 N/A 6.128±0.00 1.147±0.00 1.325±0.14 0.639±0.51 8.826±0.00 2.927±2.45 1.837±0.12 N/A 2.667±1.50 15.147±1.05 2.996±1.20
ENSG00000091483 ENST00000366560 16.964±0.00 17.987±0.00 3.689±0.00 15.819±5.95 13.454±9.20 12.877±2.54 35.884±22.06 32.465±2.16 11.194±3.41 6.871±2.64 22.834±9.24 10.679±4.70 17.808±6.80 19.098±8.91
ENST00000493477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.226±0.00 39.979±0.00 47.193±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026526 ENSMUST00000027810 18.764±5.29 22.104±6.34 3.217±0.00 6.318±2.92 18.759±4.74 17.037±9.04 32.315±7.88 30.148±12.67 33.163±7.71 6.366±4.73 48.924±19.72 20.194±4.96 14.688±12.04 2.984±2.42
ENSMUST00000130996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154956 N/A N/A N/A 16.618±0.00 N/A N/A N/A N/A N/A N/A N/A 30.469±0.00 33.005±16.24 5.921±0.00
ENSMUST00000176740 N/A N/A 36.320±2.06 13.828±0.00 49.938±22.11 N/A 74.937±7.03 47.589±4.47 47.406±11.61 N/A 44.676±2.73 N/A 44.670±20.51 6.805±0.00
ENSMUSG00000039783 ENSMUST00000040250 0.730±0.28 N/A 0.862±0.14 0.023±0.00 2.980±0.35 0.298±0.16 0.160±0.04 24.589±4.08 28.956±22.12 0.945±0.27 0.087±0.12 0.282±0.13 4.520±4.30 0.193±0.13
ENSMUST00000097458 0.205±0.00 N/A 0.102±0.00 0.008±0.00 N/A 0.126±0.00 N/A N/A N/A 0.149±0.00 0.025±0.01 0.066±0.02 0.070±0.00 0.088±0.05
ENSMUST00000137174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140474 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.613±0.00 0.012±0.00 0.253±0.17 0.040±0.00 0.318±0.02
ENSMUST00000142223 N/A N/A N/A 0.005±0.00 N/A N/A 0.142±0.00 N/A N/A N/A N/A 0.259±0.04 N/A 0.070±0.00
ENSMUST00000150646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.066±0.00 N/A N/A

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