C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367164 RBBP5-002 ENSG00000117222 9606 - 1:205086142-205122015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000367164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000367164 0.425±0.00 1.511±0.00 0.945±0.00 0.398±0.00 1.216±0.05 1.448±0.00 1.368±0.00 2.303±0.00 1.693±0.00 0.671±0.00 1.614±0.77 1.653±0.96

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0035064 IDA methylated histone binding
GO:0035097 IPI histone methyltransferase complex
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0043627 IDA response to estrogen
GO:0044212 IDA transcription regulatory region DNA binding
GO:0048188 IDA Set1C/COMPASS complex
GO:0051568 IDA histone H3-K4 methylation
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190997 Rbbp5-002 protein_coding Mus_musculus 0 2231
ENSMUST00000190825 Rbbp5-001 protein_coding Mus_musculus 0 2231
ENSMUST00000027700 Rbbp5-003 protein_coding Mus_musculus 0 2213
ENSMUST00000187505 Rbbp5-005 protein_coding Mus_musculus 0 1964
ENSMUST00000118511 Gm11977-001 processed_pseudogene Mus_musculus 0 1304
ENSMUST00000189786 Rbbp5-007 protein_coding Mus_musculus 0 761
ENSMUST00000187834 Rbbp5-006 retained_intron Mus_musculus 0 425
ENSMUST00000188575 Rbbp5-004 protein_coding Mus_musculus 0 361

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