C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MDM4, p53 regulator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367182 MDM4-001 ENSG00000198625 9606 + 1:204516383-204558120 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaTestisENST00000367182
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENST00000367182 2.456±0.00 1.461±0.00 1.047±0.00 0.899±0.00 0.247±0.00 0.770±0.16 2.819±0.00 0.657±0.44 2.041±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Z CIL_00084Z_0001 VISTA 1:204154830-204755807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI:IEA protein binding
GO:0005634 NAS:IEA nucleus
GO:0006461 IDA protein complex assembly
GO:0008270 TAS:IEA zinc ion binding
GO:0008283 IEP cell proliferation
GO:0008284 IEA positive regulation of cell proliferation
GO:0008285 TAS negative regulation of cell proliferation
GO:0019899 IPI enzyme binding
GO:0030330 IEP DNA damage response, signal transduction by p53 class mediator
GO:0042177 IMP negative regulation of protein catabolic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0045023 IEP G0 to G1 transition
GO:0050821 IEP protein stabilization
GO:0071157 IEA negative regulation of cell cycle arrest
GO:0071456 IEP cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188090 Mdm4-001 protein_coding Mus_musculus 0 1583
ENSMUST00000067398 Mdm4-003 protein_coding Mus_musculus 0 1561
ENSMUST00000067429 Mdm4-005 protein_coding Mus_musculus 0 1522
ENSMUST00000121299 Mdm4-ps-001 processed_pseudogene Mus_musculus 0 1149
ENSMUST00000185398 Mdm4-004 nonsense_mediated_decay Mus_musculus 0 1085
ENSMUST00000191212 Mdm4-002 nonsense_mediated_decay Mus_musculus 0 1031
ENSMUST00000186617 Mdm4-006 protein_coding Mus_musculus 0 1016
ENSMUST00000190312 Mdm4-011 processed_transcript Mus_musculus 0 532
ENSMUST00000185418 Mdm4-010 retained_intron Mus_musculus 0 444
ENSMUST00000190807 Mdm4-009 protein_coding Mus_musculus 0 387
ENSMUST00000189596 Mdm4-012 retained_intron Mus_musculus 0 333
ENSMUST00000187529 Mdm4-013 retained_intron Mus_musculus 0 263
ENSMUST00000186513 Mdm4-008 retained_intron Mus_musculus 9.99995e-41 174
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000008 66

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