C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformed mouse 3T3 cell double minute 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188090 Mdm4-001 ENSMUSG00000054387 10090 - 1:132986220-133025416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000188090
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000188090 12.467±9.16 30.520±8.85 22.318±14.12 9.640±4.38 3.127±0.00 5.378±2.24 3.080±0.91 14.448±6.19 9.855±4.83 3.951±1.43 12.581±11.06 11.708±6.54 9.188±5.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Z CIL_00084Z_0002 VISTA 1:132779893-133380922
CIL_00056L CIL_00056L_0002 CGP 1:132880273-133030561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006461 IEA protein complex assembly
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0008284 IMP positive regulation of cell proliferation
GO:0019899 IEA enzyme binding
GO:0030330 ISS DNA damage response, signal transduction by p53 class mediator
GO:0042177 ISS negative regulation of protein catabolic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0045023 ISS G0 to G1 transition
GO:0050821 IEA protein stabilization
GO:0071157 IEA negative regulation of cell cycle arrest
GO:0071456 IEA cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367179 MDM4-006 protein_coding Homo_sapiens 0 597
ENST00000367180 MDM4-009 protein_coding Homo_sapiens 0 401
ENST00000367182 MDM4-001 protein_coding Homo_sapiens 0 1583
ENST00000367183 MDM4-201 protein_coding Homo_sapiens 0.000000000002 81
ENST00000391947 MDM4-202 protein_coding Homo_sapiens 0 1031
ENST00000444261 MDM4-007 protein_coding Homo_sapiens 0 340
ENST00000454264 MDM4-203 protein_coding Homo_sapiens 0 813
ENST00000463049 MDM4-002 processed_transcript Homo_sapiens 0 1083
ENST00000470797 MDM4-005 processed_transcript Homo_sapiens 0 460
ENST00000470908 MDM4-003 processed_transcript Homo_sapiens 0 440
ENST00000471783 MDM4-004 processed_transcript Homo_sapiens 0 333
ENST00000507825 MDM4-204 protein_coding Homo_sapiens 0 381
ENST00000612738 MDM4-205 protein_coding Homo_sapiens 0 619
ENST00000614459 MDM4-206 protein_coding Homo_sapiens 0 1081
ENST00000616250 MDM4-207 protein_coding Homo_sapiens 0 619
ENST00000621032 MDM4-208 protein_coding Homo_sapiens 0 1083

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