C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 5, group A, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027649 Nr5a2-201 ENSMUSG00000026398 10090 - 1:136843584-136960427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryENSMUST00000027649
Transcript ID Colon Liver Ovary
ENSMUST00000027649 1.701±0.41 3.835±1.19 9.146±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MU CIL_0007MU_0002 UCNEbase 1:136590245-137142145

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0008206 IMP bile acid metabolic process
GO:0008270 IEA zinc ion binding
GO:0031018 TAS endocrine pancreas development
GO:0042127 IGI regulation of cell proliferation
GO:0042632 IMP cholesterol homeostasis
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045070 IEA positive regulation of viral genome replication
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP:IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236914 NR5A2-003 protein_coding Homo_sapiens 0 1820
ENST00000367357 NR5A2-005 protein_coding Homo_sapiens 0 1003
ENST00000367362 NR5A2-001 protein_coding Homo_sapiens 0 2006
ENST00000447034 NR5A2-004 protein_coding Homo_sapiens 1e-35 152
ENST00000474307 NR5A2-002 nonsense_mediated_decay Homo_sapiens 9.80909e-45 185
ENST00000544748 NR5A2-201 protein_coding Homo_sapiens 0 1821

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