C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgin, RAB6-interacting
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367763 GORAB-001 ENSG00000120370 9606 + 1:170532129-170553446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000367763
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000367763 0.559±0.00 1.615±0.00 0.160±0.00 0.703±0.16 0.849±0.21 1.007±0.00 1.298±0.00 0.931±0.33 2.005±0.00 1.839±0.94 1.409±0.09 3.608±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000280 CIL_000280_0002 CGP 1:170146001-170553446
CIL_000284 CIL_000284_0002 CGP 1:170532129-170739419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 ISS cytoplasm
GO:0005794 IDA Golgi apparatus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045138 Gorab-001 protein_coding Mus_musculus 0 907
ENSMUST00000186402 Gorab-002 nonsense_mediated_decay Mus_musculus 0 503
ENSMUST00000185299 Gorab-003 retained_intron Mus_musculus 0 490

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