C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000284_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000042031-ENSDARG00000042027 CGP 7955 20:34525760-34545649
GeneTranscriptPositionBiotype
ENSDARG00000042027 (prrx1b)
paired related homeobox 1b 		ENSDART00000061588 (prrx1b-001) 34536286-34545649 protein_coding
ENSDART00000131637 (prrx1b-002) 34536738-34544216 protein_coding
CIL_000284_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000120370-ENSG00000116132 CGP 9606 1:170532129-170739419
GeneTranscriptPositionBiotype
ENSG00000116132 (PRRX1)
paired related homeobox 1 		ENST00000239461 (PRRX1-002) 170663906-170739419 protein_coding
ENST00000367760 (PRRX1-001) 170663134-170736508 protein_coding
ENST00000476867 (PRRX1-003) 170722617-170736399 processed_transcript
ENST00000485529 (PRRX1-007) 170730206-170736233 processed_transcript
ENST00000495280 (PRRX1-004) 170722645-170736233 processed_transcript
ENST00000496573 (PRRX1-006) 170730446-170736233 processed_transcript
ENST00000497230 (PRRX1-005) 170663937-170729021 protein_coding
ENST00000553786 (PRRX1-008) 170662728-170719903 processed_transcript
ENSG00000120370 (GORAB)
golgin, RAB6-interacting 		ENST00000367762 (GORAB-002) 170532131-170545789 protein_coding
ENST00000367763 (GORAB-001) 170532129-170553446 protein_coding
ENST00000465717 (GORAB-006) 170536275-170539659 processed_transcript
ENST00000475113 (GORAB-007) 170544640-170552276 retained_intron
ENST00000498166 (GORAB-004) 170532151-170553446 nonsense_mediated_decay
ENST00000498600 (GORAB-005) 170539062-170553446 retained_intron
ENSG00000231407 (RP11-576I22.2)
 ENST00000416416 (RP11-576I22.2-002) 170460453-170517706 antisense
ENST00000421020 (RP11-576I22.2-001) 170509961-170532000 antisense
ENST00000446102 (RP11-576I22.2-003) 170461317-170494540 antisense
ENST00000456083 (RP11-576I22.2-004) 170462209-170532647 antisense
ENSG00000235303 (RP1-79C4.1)
 ENST00000413005 (RP1-79C4.1-001) 170598854-170647339 lincRNA
ENSG00000271811 (RP1-79C4.4)
 ENST00000606154 (RP1-79C4.4-001) 170667381-170669425 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000284_0001ENSDARG00000042027ENSDART00000061588ENSDART00000131637CIL_000284_0002ENSG00000116132ENST00000239461ENST00000367760ENST00000476867ENST00000485529ENST00000495280ENST00000496573ENST00000497230ENST00000553786ENSG00000120370ENST00000367762ENST00000367763ENST00000465717ENST00000475113ENST00000498166ENST00000498600ENSG00000231407ENST00000416416ENST00000421020ENST00000446102ENST00000456083ENSG00000235303ENST00000413005ENSG00000271811ENST00000606154
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000284_0001ENSDARG00000042027ENSDART00000061588ENSDART00000131637CIL_000284_0002ENSG00000116132ENST00000239461ENST00000367760ENST00000497230ENSG00000120370ENST00000367762ENST00000367763ENST00000465717ENST00000475113ENST00000498166ENST00000498600ENSG00000231407ENST00000416416ENST00000421020ENST00000446102ENST00000456083ENSG00000235303ENST00000413005ENSG00000271811ENST00000606154
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042027 ENSDART00000061588 N/A N/A N/A 0.120±0.04 N/A N/A 0.084±0.04 0.044±0.05 N/A N/A 0.054±0.00 N/A N/A N/A
ENSDART00000131637 N/A N/A N/A 0.127±0.08 N/A N/A 0.342±0.19 0.282±0.00 N/A N/A 0.302±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116132 ENST00000239461 22.856±0.00 10.345±0.00 0.089±0.00 0.784±0.05 8.924±3.66 1.899±0.00 3.287±0.24 0.288±0.25 3.656±0.00 7.583±4.32 7.206±5.36 4.704±5.44 2.735±2.35 8.879±0.51
ENST00000367760 N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A
ENST00000476867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497230 N/A N/A 0.076±0.00 0.423±0.00 1.315±0.00 0.724±0.00 N/A 0.133±0.05 0.012±0.00 3.910±0.00 N/A 3.705±0.00 0.938±0.00 N/A
ENST00000553786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000120370 ENST00000367762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A
ENST00000367763 0.559±0.00 1.615±0.00 0.160±0.00 N/A 0.703±0.16 0.849±0.21 1.007±0.00 1.298±0.00 0.931±0.33 2.005±0.00 N/A 1.839±0.94 1.409±0.09 3.608±0.00
ENST00000465717 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.459±0.00 N/A N/A N/A N/A
ENST00000475113 1.107±0.00 N/A N/A 0.929±0.00 4.491±0.00 2.591±0.00 N/A N/A 4.150±0.00 N/A N/A 9.247±3.96 5.995±0.00 12.489±0.00
ENST00000498166 N/A 1.983±0.00 0.084±0.00 0.605±0.00 0.452±0.00 0.298±0.00 0.282±0.00 N/A 0.152±0.00 0.227±0.00 N/A 0.947±0.22 N/A 1.345±0.62
ENST00000498600 N/A N/A 0.151±0.00 0.321±0.00 N/A N/A 0.262±0.00 N/A N/A 0.809±0.00 N/A 0.959±0.00 N/A 1.852±0.00
ENSG00000231407 ENST00000416416 0.165±0.00 0.218±0.00 N/A N/A N/A 0.108±0.00 N/A N/A 0.020±0.01 0.205±0.00 N/A 0.032±0.01 N/A 0.156±0.00
ENST00000421020 N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000446102 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 0.059±0.02 N/A N/A N/A 0.477±0.00
ENST00000456083 N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 0.398±0.00 N/A 0.073±0.00 0.147±0.04 1.157±0.47
ENSG00000235303 ENST00000413005 0.023±0.00 0.113±0.00 N/A 0.074±0.00 0.032±0.00 0.010±0.00 0.043±0.00 0.066±0.00 N/A 0.096±0.00 N/A 0.018±0.00 N/A 0.078±0.03
ENSG00000271811 ENST00000606154 3.063±0.00 2.234±0.00 0.080±0.00 0.340±0.00 1.169±0.59 0.340±0.25 0.210±0.07 0.030±0.00 0.426±0.00 1.090±0.61 0.396±0.09 0.871±1.27 0.059±0.00 0.766±0.00

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