C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-myb avian myeloblastosis viral oncogene homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367812 MYB-006 ENSG00000118513 9606 + 6:135181315-135219167 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverPlacentaENST00000367812
Transcript ID Adipose Brain Breast Kidney Liver Placenta
ENST00000367812 0.317±0.00 0.044±0.00 0.199±0.00 0.059±0.00 0.032±0.00 0.393±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014P CIL_00014P_0002 CGP 6:134960378-135219173
CIL_0009AJ CIL_0009AJ_0001 VISTA 6:134980560-135582914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:NAS regulation of transcription, DNA-templated
GO:0007596 TAS blood coagulation
GO:0016363 NAS nuclear matrix
GO:0045624 IMP positive regulation of T-helper cell differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051571 IMP positive regulation of histone H3-K4 methylation
GO:0051574 IMP positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020158 Myb-001 protein_coding Mus_musculus 0 2200
ENSMUST00000186446 Myb-003 retained_intron Mus_musculus 0 2148
ENSMUST00000188495 Myb-002 protein_coding Mus_musculus 0 1731

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