C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin-A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368406 EFNA1-002 ENSG00000169242 9606 + 1:155127876-155134857 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368406
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368406 12.791±0.00 12.249±0.00 3.171±0.00 9.515±0.00 3.983±3.19 6.372±0.00 20.444±0.00 49.048±0.00 46.701±0.00 1.063±0.62 8.978±0.95 57.058±11.14 4.806±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LV CIL_0000LV_0003 CGP 1:155078872-155134857
CIL_0000LP CIL_0000LP_0002 CGP 1:155127460-155138857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001525 IBA angiogenesis
GO:0003180 ISS aortic valve morphogenesis
GO:0003183 ISS mitral valve morphogenesis
GO:0003199 ISS endocardial cushion to mesenchymal transition involved in heart valve formation
GO:0005102 TAS receptor binding
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0007267 TAS cell-cell signaling
GO:0007411 IBA axon guidance
GO:0010719 ISS negative regulation of epithelial to mesenchymal transition
GO:0016020 IEA membrane
GO:0016477 IDA cell migration
GO:0033628 IDA regulation of cell adhesion mediated by integrin
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0046658 IBA anchored component of plasma membrane
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050730 ISS regulation of peptidyl-tyrosine phosphorylation
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0061002 ISS negative regulation of dendritic spine morphogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118860 Efna1-003 protein_coding Mus_musculus 0 636
ENSMUST00000029566 Efna1-001 protein_coding Mus_musculus 0 494
ENSMUST00000118587 Efna1-002 protein_coding Mus_musculus 0 403

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