C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000LV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014675-ENSDARG00000030326 CGP 7955 19:8767109-9124857
GeneTranscriptPositionBiotype
ENSDARG00000014675 (efna3a)
ephrin A3a 		ENSDART00000027274 (efna3a-201) 8767345-8962075 protein_coding
ENSDART00000147218 (efna3a-001) 8767109-8959272 protein_coding
ENSDARG00000030326 (efna1a)
ephrin A1a 		ENSDART00000050217 (efna1a-001) 9104338-9124857 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000LV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032485-ENSDARG00000018787 CGP 7955 16:25328171-25537442
GeneTranscriptPositionBiotype
ENSDARG00000018787 (efna1b)
ephrin A1b 		ENSDART00000015956 (efna1b-001) 25521948-25537442 protein_coding
ENSDART00000135279 (efna1b-002) 25533979-25536499 retained_intron
ENSDARG00000032485 (efna3b)
ephrin A3b 		ENSDART00000103229 (efna3b-201) 25409913-25429162 protein_coding
ENSDART00000121607 (efna3b-202) 25328171-25432719 protein_coding

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CIL_0000LV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143590-ENSG00000169242 CGP 9606 1:155078872-155134857
GeneTranscriptPositionBiotype
ENSG00000143590 (EFNA3)
ephrin-A3 		ENST00000368408 (EFNA3-001) 155078872-155087538 protein_coding
ENST00000470294 (EFNA3-003) 155085516-155086982 processed_transcript
ENST00000498667 (EFNA3-002) 155085522-155086923 processed_transcript
ENSG00000169242 (EFNA1)
ephrin-A1 		ENST00000368406 (EFNA1-002) 155127876-155134857 protein_coding
ENST00000368407 (EFNA1-001) 155127460-155134857 protein_coding
ENST00000469878 (EFNA1-003) 155127888-155134486 processed_transcript
ENST00000474413 (EFNA1-004) 155129562-155134307 processed_transcript
ENST00000497282 (EFNA1-005) 155131204-155134125 processed_transcript
ENSG00000202027 (Y_RNA)
Y RNA 		ENST00000365157 (Y_RNA.1-525) 155120490-155120598 misc_RNA
ENSG00000251246 (EFNA3)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000426741}; cDNA FLJ57652, highly similar to Ephrin-A3 {ECO:0000313|EMBL:BAG6 		ENST00000505139 (EFNA3-001) 155063748-155086807 protein_coding

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LV_0001ENSDARG00000014675ENSDART00000027274ENSDART00000147218ENSDARG00000030326ENSDART00000050217CIL_0000LV_0002ENSDARG00000018787ENSDART00000015956ENSDART00000135279ENSDARG00000032485ENSDART00000103229ENSDART00000121607CIL_0000LV_0003ENSG00000143590ENST00000368408ENST00000470294ENST00000498667ENSG00000169242ENST00000368406ENST00000368407ENST00000469878ENST00000474413ENST00000497282ENSG00000202027ENST00000365157ENSG00000251246ENST00000505139
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LV_0001ENSDARG00000014675ENSDART00000027274ENSDART00000147218ENSDARG00000030326ENSDART00000050217CIL_0000LV_0002ENSDARG00000018787ENSDART00000015956ENSDARG00000032485ENSDART00000103229ENSDART00000121607CIL_0000LV_0003ENSG00000143590ENST00000368408ENST00000498667ENSG00000169242ENST00000368406ENST00000368407ENST00000469878ENST00000474413ENST00000497282ENSG00000202027ENST00000365157ENSG00000251246ENST00000505139
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014675 ENSDART00000027274 N/A N/A N/A 2.121±0.96 N/A N/A N/A 0.059±0.04 N/A N/A 0.243±0.00 N/A N/A N/A
ENSDART00000147218 N/A N/A N/A 1.862±0.00 N/A N/A N/A 0.225±0.00 0.049±0.00 N/A N/A N/A N/A N/A
ENSDARG00000030326 ENSDART00000050217 N/A N/A N/A 13.550±3.25 N/A N/A 2.459±0.96 4.507±0.00 0.648±0.00 N/A 3.017±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018787 ENSDART00000015956 N/A N/A N/A 15.418±6.26 N/A N/A 5.246±3.19 4.805±1.31 0.198±0.00 N/A 16.450±0.00 N/A N/A N/A
ENSDART00000135279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000032485 ENSDART00000103229 N/A N/A N/A N/A N/A N/A 0.420±0.00 0.661±0.00 0.252±0.00 N/A N/A N/A N/A N/A
ENSDART00000121607 N/A N/A N/A 4.182±1.98 N/A N/A 0.099±0.07 N/A 0.411±0.00 N/A 0.194±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143590 ENST00000368408 N/A 0.615±0.00 0.034±0.00 6.750±3.36 0.644±0.23 0.237±0.00 N/A N/A N/A N/A N/A 2.697±0.00 0.885±0.00 2.639±0.00
ENST00000470294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498667 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A N/A
ENSG00000169242 ENST00000368406 12.791±0.00 12.249±0.00 N/A 3.171±0.00 9.515±0.00 3.983±3.19 6.372±0.00 20.444±0.00 49.048±0.00 46.701±0.00 1.063±0.62 8.978±0.95 57.058±11.14 4.806±0.00
ENST00000368407 N/A N/A 0.500±0.00 1.529±1.05 N/A 2.789±2.32 1.491±0.00 5.563±2.30 39.202±0.00 15.823±14.59 2.426±0.00 8.906±3.97 38.229±1.03 1.364±0.02
ENST00000469878 N/A 7.080±0.00 1.486±0.00 2.683±2.45 2.884±0.38 2.587±0.36 1.598±1.00 4.061±0.00 1.793±0.00 13.765±8.67 N/A 6.348±4.35 N/A 1.383±0.00
ENST00000474413 N/A N/A N/A N/A N/A N/A 0.752±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000497282 N/A N/A N/A 0.418±0.00 N/A N/A N/A 3.158±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000202027 ENST00000365157 N/A N/A N/A 0.173±0.00 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251246 ENST00000505139 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A

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