C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin-A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368407 EFNA1-001 ENSG00000169242 9606 + 1:155127460-155134857 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368407
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368407 0.500±0.00 1.529±1.05 2.789±2.32 1.491±0.00 5.563±2.30 39.202±0.00 15.823±14.59 2.426±0.00 8.906±3.97 38.229±1.03 1.364±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LV CIL_0000LV_0003 CGP 1:155078872-155134857
CIL_0000LP CIL_0000LP_0002 CGP 1:155127460-155138857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000187 IEA activation of MAPK activity
GO:0001525 IBA angiogenesis
GO:0003180 ISS aortic valve morphogenesis
GO:0003183 ISS mitral valve morphogenesis
GO:0003199 ISS endocardial cushion to mesenchymal transition involved in heart valve formation
GO:0005102 TAS receptor binding
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0007267 TAS cell-cell signaling
GO:0007411 IBA axon guidance
GO:0010719 ISS negative regulation of epithelial to mesenchymal transition
GO:0014028 IEA notochord formation
GO:0016020 IEA membrane
GO:0016477 IDA cell migration
GO:0030182 IEA neuron differentiation
GO:0033628 IDA regulation of cell adhesion mediated by integrin
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0043535 IEA regulation of blood vessel endothelial cell migration
GO:0045765 IEA regulation of angiogenesis
GO:0046658 IBA anchored component of plasma membrane
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050730 ISS regulation of peptidyl-tyrosine phosphorylation
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0050770 IEA regulation of axonogenesis
GO:0061002 ISS negative regulation of dendritic spine morphogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029566 Efna1-001 protein_coding Mus_musculus 0 699
ENSMUST00000118587 Efna1-002 protein_coding Mus_musculus 0 520
ENSMUST00000118860 Efna1-003 protein_coding Mus_musculus 0 494

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