C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK6 homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368592 NKX6-2-001 ENSG00000148826 9606 - 10:132783181-132786052 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000368592
Transcript ID Brain
ENST00000368592 3.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W3 CIL_0008W3_0001 VISTA 10:132328525-132933308
CIL_0000BD CIL_0000BD_0001 CGP 10:132537820-132786052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 NAS nucleus
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0010454 IEA negative regulation of cell fate commitment
GO:0010455 IEA positive regulation of cell fate commitment
GO:0021912 IEA regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification
GO:0021913 IEA regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification
GO:0022010 IEA central nervous system myelination
GO:0030154 IEA cell differentiation
GO:0031018 IEA endocrine pancreas development
GO:0043565 IEA sequence-specific DNA binding
GO:0045686 IEA negative regulation of glial cell differentiation
GO:0045687 IEA positive regulation of glial cell differentiation
GO:0048709 IEA oligodendrocyte differentiation
GO:0050885 IEA neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106095 Nkx6-2-001 protein_coding Mus_musculus 0 1123
ENSMUST00000097974 Nkx6-2-002 nonsense_mediated_decay Mus_musculus 0 1123
ENSMUST00000037807 Vax2-004 protein_coding Mus_musculus 0.0000003 62

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