C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNAP-associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368685 SNAPIN-001 ENSG00000143553 9606 + 1:153658654-153661830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000368685
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000368685 16.964±0.00 23.991±0.00 26.001±0.00 14.917±0.00 16.374±13.21 14.023±10.28 10.197±3.30 15.211±11.09 31.719±5.82 25.906±1.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LY CIL_0000LY_0002 CGP 1:153633982-153661830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IDA SNARE binding
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005794 IDA Golgi apparatus
GO:0005829 IEA cytosol
GO:0006886 IEA intracellular protein transport
GO:0007268 IEA synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0008021 IDA synaptic vesicle
GO:0008089 ISS anterograde axon cargo transport
GO:0008333 IGI endosome to lysosome transport
GO:0010977 IEA negative regulation of neuron projection development
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0016079 IDA synaptic vesicle exocytosis
GO:0016188 IEA synaptic vesicle maturation
GO:0030054 IEA cell junction
GO:0030141 ISS secretory granule
GO:0031083 IDA:IEA BLOC-1 complex
GO:0031175 ISS neuron projection development
GO:0031629 IEA synaptic vesicle fusion to presynaptic membrane
GO:0032438 NAS melanosome organization
GO:0043393 IMP regulation of protein binding
GO:0045202 IDA synapse
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048489 IMP synaptic vesicle transport
GO:0048490 ISS anterograde synaptic vesicle transport
GO:0072553 IEA terminal button organization
GO:0097352 IEA autophagic vacuole maturation
GO:1902824 TAS positive regulation of late endosome to lysosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149884 Snapin-001 protein_coding Mus_musculus 0 577
ENSMUST00000184877 Snapin-002 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000107351 Snapin-004 retained_intron Mus_musculus 0 351

Loading