C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 1, with ZNF domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105490 Prdm1-002 ENSMUSG00000038151 10090 - 10:44438293-44458687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000105490
Transcript ID Adrenal Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000105490 0.529±0.00 0.718±0.56 0.542±0.14 0.129±0.02 0.048±0.02 0.747±0.35 1.246±0.22 0.034±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KJ CIL_0005KJ_0002 CGP 10:44268358-44528501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IMP in utero embryonic development
GO:0001892 IMP embryonic placenta development
GO:0001893 IMP maternal placenta development
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007281 IGI germ cell development
GO:0008168 IEA methyltransferase activity
GO:0009791 IMP post-embryonic development
GO:0010628 IDA positive regulation of gene expression
GO:0010629 IMP negative regulation of gene expression
GO:0030889 IDA negative regulation of B cell proliferation
GO:0031665 IDA negative regulation of lipopolysaccharide-mediated signaling pathway
GO:0032259 IEA methylation
GO:0042462 IMP eye photoreceptor cell development
GO:0042826 IDA histone deacetylase binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045165 IMP cell fate commitment
GO:0045579 IDA positive regulation of B cell differentiation
GO:0046872 IEA metal ion binding
GO:0060576 IMP intestinal epithelial cell development
GO:0060707 IMP trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017445 prdm1a-001 protein_coding Danio_rerio 0 387
ENSDART00000139491 prdm1c-001 protein_coding Danio_rerio 9e-19 100
ENST00000369089 PRDM1-002 protein_coding Homo_sapiens 0 2874
ENST00000369091 PRDM1-004 protein_coding Homo_sapiens 0 2719
ENST00000369096 PRDM1-001 protein_coding Homo_sapiens 0 3491
ENST00000450060 PRDM1-007 protein_coding Homo_sapiens 0 582
ENST00000481163 PRDM1-003 retained_intron Homo_sapiens 0 370
ENST00000613999 PRDM1-201 protein_coding Homo_sapiens 0 3445

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