C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opsin 1 (cone pigments), medium-wave-sensitive 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369929 OPN1MW2-001 ENSG00000166160 9606 + X:154219756-154233286 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GD CIL_0007GD_0004 CGP X:154182596-154233286
CIL_0007GD CIL_0007GD_0003 CGP X:154219756-154271805

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0004930 IEA G-protein coupled receptor activity
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage
GO:0032467 IMP positive regulation of cytokinesis
GO:0042622 TAS photoreceptor outer segment membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033771 Opn1mw-001 protein_coding Mus_musculus 0 1266
ENSMUST00000101457 Opn1mw-002 protein_coding Mus_musculus 0 1181
ENSMUST00000135307 Opn1mw-003 processed_transcript Mus_musculus 0 614
ENSMUST00000127445 Opn1mw-006 protein_coding Mus_musculus 0 514
ENSMUST00000145443 Opn1mw-004 processed_transcript Mus_musculus 0 300
ENSMUST00000123401 Opn1mw-005 processed_transcript Mus_musculus 0 230

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