C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: L1 cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370055 L1CAM-006 ENSG00000198910 9606 - X:153861953-153886154 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverENST00000370055
Transcript ID Colon Kidney Liver
ENST00000370055 18.723±0.00 12.570±0.00 1.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0001 CGP X:153802166-153909223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006935 TAS chemotaxis
GO:0007155 NAS cell adhesion
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0007596 TAS blood coagulation
GO:0008219 IEA cell death
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0050900 TAS leukocyte migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066576 L1cam-010 protein_coding Mus_musculus 0 3951
ENSMUST00000114430 L1cam-008 protein_coding Mus_musculus 0 3897
ENSMUST00000102871 L1cam-001 protein_coding Mus_musculus 0 3842
ENSMUST00000129612 L1cam-002 retained_intron Mus_musculus 0 695
ENSMUST00000145805 L1cam-006 retained_intron Mus_musculus 0 531
ENSMUST00000155246 L1cam-003 retained_intron Mus_musculus 0 486
ENSMUST00000144478 L1cam-007 retained_intron Mus_musculus 0 459
ENSMUST00000148250 L1cam-009 protein_coding Mus_musculus 0 448
ENSMUST00000124560 L1cam-011 protein_coding Mus_musculus 0 377
ENSMUST00000130110 L1cam-004 retained_intron Mus_musculus 0 344
ENSMUST00000141221 L1cam-013 processed_transcript Mus_musculus 0 285
ENSMUST00000146790 L1cam-014 protein_coding Mus_musculus 0 244
ENSMUST00000135104 L1cam-005 retained_intron Mus_musculus 0 209

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