C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: L1 cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370060 L1CAM-001 ENSG00000198910 9606 - X:153861514-153886146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonENST00000370060
Transcript ID Brain Colon
ENST00000370060 13.923±6.31 8.138±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001US CIL_0001US_0001 CGP X:153802166-153909223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006935 TAS chemotaxis
GO:0007155 NAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IEA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IEA leukocyte cell-cell adhesion
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0007596 TAS blood coagulation
GO:0008219 IEA cell death
GO:0009897 IEA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0022409 IEA positive regulation of cell-cell adhesion
GO:0031175 IEA neuron projection development
GO:0033631 IEA cell-cell adhesion mediated by integrin
GO:0033691 IEA sialic acid binding
GO:0034109 IEA homotypic cell-cell adhesion
GO:0042734 IEA presynaptic membrane
GO:0042802 IEA identical protein binding
GO:0043195 IEA terminal bouton
GO:0043621 IEA protein self-association
GO:0050850 IEA positive regulation of calcium-mediated signaling
GO:0050900 TAS leukocyte migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102871 L1cam-001 protein_coding Mus_musculus 0 4000
ENSMUST00000114430 L1cam-008 protein_coding Mus_musculus 0 3923
ENSMUST00000066576 L1cam-010 protein_coding Mus_musculus 0 3836
ENSMUST00000129612 L1cam-002 retained_intron Mus_musculus 0 774
ENSMUST00000144478 L1cam-007 retained_intron Mus_musculus 0 536
ENSMUST00000145805 L1cam-006 retained_intron Mus_musculus 0 531
ENSMUST00000155246 L1cam-003 retained_intron Mus_musculus 0 486
ENSMUST00000148250 L1cam-009 protein_coding Mus_musculus 0 448
ENSMUST00000141221 L1cam-013 processed_transcript Mus_musculus 0 364
ENSMUST00000130110 L1cam-004 retained_intron Mus_musculus 0 344
ENSMUST00000146790 L1cam-014 protein_coding Mus_musculus 0 326
ENSMUST00000124560 L1cam-011 protein_coding Mus_musculus 0 322
ENSMUST00000135104 L1cam-005 retained_intron Mus_musculus 0 209

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