C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucocorticoid modulatory element binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370069 GMEB2-002 ENSG00000101216 9606 - 20:63587602-63604902 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverMuscleOvaryPlacentaENST00000370069
Transcript ID Adrenal Brain Colon Kidney Liver Muscle Ovary Placenta
ENST00000370069 3.513±0.00 0.409±0.00 0.221±0.00 0.689±0.45 0.642±0.00 0.392±0.00 1.796±1.24 1.187±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012X CIL_00012X_0001 CGP 20:63558086-63627041
CIL_0004EX CIL_0004EX_0001 CGP 20:63587602-63653427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000160 IEA phosphorelay signal transduction system
GO:0003677 IEA DNA binding
GO:0003713 IEA transcription coactivator activity
GO:0004871 IEA signal transducer activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049032 Gmeb2-001 protein_coding Mus_musculus 0 1600
ENSMUST00000141110 Gmeb2-002 nonsense_mediated_decay Mus_musculus 0 1419
ENSMUST00000130475 Gmeb2-005 protein_coding Mus_musculus 0 603
ENSMUST00000141003 Gmeb2-004 nonsense_mediated_decay Mus_musculus 0 542
ENSMUST00000168553 Gmeb1-201 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000105964 Gmeb1-003 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000030733 Gmeb1-002 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000105965 Gmeb1-001 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000125534 Gmeb1-004 retained_intron Mus_musculus 4e-27 128

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