C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucocorticoid modulatory element binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370077 GMEB2-003 ENSG00000101216 9606 - 20:63587602-63627041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370077 3.174±0.00 3.177±0.00 0.387±0.00 1.443±0.99 2.364±1.10 1.730±0.00 1.186±0.95 2.880±0.00 1.168±0.21 2.151±2.00 1.500±0.64 5.064±3.13 2.895±1.08 11.705±2.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012X CIL_00012X_0001 CGP 20:63558086-63627041
CIL_0004EX CIL_0004EX_0001 CGP 20:63587602-63653427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000160 IEA phosphorelay signal transduction system
GO:0003677 IEA DNA binding
GO:0003713 IEA transcription coactivator activity
GO:0004871 IEA signal transducer activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049032 Gmeb2-001 protein_coding Mus_musculus 0 1731
ENSMUST00000141110 Gmeb2-002 nonsense_mediated_decay Mus_musculus 0 1543
ENSMUST00000130475 Gmeb2-005 protein_coding Mus_musculus 0 734
ENSMUST00000141003 Gmeb2-004 nonsense_mediated_decay Mus_musculus 0 673
ENSMUST00000147665 Gmeb2-003 retained_intron Mus_musculus 0 248
ENSMUST00000168553 Gmeb1-201 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000105964 Gmeb1-003 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000030733 Gmeb1-002 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000105965 Gmeb1-001 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000125534 Gmeb1-004 retained_intron Mus_musculus 4e-27 128

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