C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ladybird homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370193 LBX1-001 ENSG00000138136 9606 - 10:101226195-101229794 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungMuscleOvaryPlacentaENST00000370193
Transcript ID Brain Breast Lung Muscle Ovary Placenta
ENST00000370193 0.047±0.01 0.434±0.00 0.203±0.00 5.692±4.88 0.035±0.00 0.063±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0007ZR CIL_0007ZR_0001 VISTA 10:101034855-101635629
CIL_0001C6 CIL_0001C6_0002 CGP 10:101130505-101229794
CIL_00089J CIL_00089J_0001 VISTA 10:101185253-101786853
CIL_000942 CIL_000942_0001 VISTA 10:101206892-101808215
CIL_0007PC CIL_0007PC_0001 UCNEbase 10:101219422-101507851
CIL_0005NA CIL_0005NA_0001 CGP 10:101226195-101557321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007517 IEA muscle organ development
GO:0008285 IEA negative regulation of cell proliferation
GO:0009653 TAS anatomical structure morphogenesis
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0021920 IEA regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IEA negative regulation of neuron differentiation
GO:0048663 IEA neuron fate commitment
GO:0048664 IEA neuron fate determination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099401 Lbx1-001 protein_coding Mus_musculus 0 2333

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