C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370372 BLOC1S2-002 ENSG00000196072 9606 - 10:100274695-100286712 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370372 10.299±0.00 11.724±0.00 0.712±0.00 8.510±1.04 7.092±4.01 2.436±0.96 3.357±2.25 5.974±4.49 4.531±2.49 5.055±1.64 5.346±4.93 24.262±13.30 9.653±0.25 11.309±1.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_0005DX CIL_0005DX_0001 CGP 10:100232298-100286712
CIL_0005E2 CIL_0005E2_0001 CGP 10:100273280-100330486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000930 IDA gamma-tubulin complex
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005813 IDA centrosome
GO:0005829 IEA cytosol
GO:0007020 NAS microtubule nucleation
GO:0008022 IPI protein C-terminus binding
GO:0008089 ISS anterograde axon cargo transport
GO:0008284 IDA positive regulation of cell proliferation
GO:0008625 IDA extrinsic apoptotic signaling pathway via death domain receptors
GO:0031083 IDA BLOC-1 complex
GO:0031175 ISS neuron projection development
GO:0032438 NAS melanosome organization
GO:0043015 IDA gamma-tubulin binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IBA positive regulation of transcription from RNA polymerase II promoter
GO:0048490 ISS anterograde synaptic vesicle transport
GO:0055037 IEA recycling endosome
GO:0060155 NAS platelet dense granule organization
GO:0097345 IDA mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079033 Bloc1s2-201 protein_coding Mus_musculus 0 540
ENSMUST00000159853 Gm7241-001 processed_pseudogene Mus_musculus 0 377

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