C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079033 Bloc1s2-201 ENSMUSG00000057506 10090 - 19:44139266-44146446 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079033 7.385±3.69 8.478±2.14 9.964±1.50 31.788±16.37 7.197±1.80 14.270±6.20 6.252±1.92 10.834±2.13 15.143±4.03 8.954±0.28 8.401±0.48 11.380±5.13 22.389±7.03 21.052±4.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DX CIL_0005DX_0002 CGP 19:44108644-44146446
CIL_0005E2 CIL_0005E2_0002 CGP 19:44139266-44192442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000930 IEA gamma-tubulin complex
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 ISS mitochondrion
GO:0005813 IBA centrosome
GO:0005829 IDA cytosol
GO:0008022 IEA protein C-terminus binding
GO:0008089 IMP anterograde axon cargo transport
GO:0008284 IEA positive regulation of cell proliferation
GO:0008625 ISS extrinsic apoptotic signaling pathway via death domain receptors
GO:0031083 ISS BLOC-1 complex
GO:0031175 NAS neuron projection development
GO:0043015 IEA gamma-tubulin binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IBA positive regulation of transcription from RNA polymerase II promoter
GO:0048490 IMP anterograde synaptic vesicle transport
GO:0055037 IEA recycling endosome
GO:0097345 ISS mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361832 BLOC1S2-003 processed_transcript Homo_sapiens 0 320
ENST00000370372 BLOC1S2-002 protein_coding Homo_sapiens 0 540
ENST00000428431 RP13-100A9.2-001 processed_pseudogene Homo_sapiens 0 215
ENST00000441611 BLOC1S2-001 protein_coding Homo_sapiens 0 507
ENST00000579542 BLOC1S2-004 protein_coding Homo_sapiens 0 346
ENST00000614731 BLOC1S2-201 protein_coding Homo_sapiens 0 507

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