C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 5-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371477 CDC5L-001 ENSG00000096401 9606 + 6:44387525-44450426 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371477 5.196±0.00 4.738±0.00 0.947±0.00 4.271±0.72 4.161±0.36 3.987±2.05 3.110±1.24 4.536±0.17 3.860±1.62 4.256±0.82 4.875±2.84 4.423±0.42 4.037±2.37 10.041±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DS CIL_0008DS_0001 VISTA 6:44250447-44853640
CIL_00028U CIL_00028U_0002 CGP 6:44387525-45377953

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000974 IDA Prp19 complex
GO:0003677 NAS:IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005662 IDA DNA replication factor A complex
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008380 IEA RNA splicing
GO:0016020 IDA membrane
GO:0016607 IDA nuclear speck
GO:0019904 IEA protein domain specific binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071987 IDA WD40-repeat domain binding
GO:0072422 IMP signal transduction involved in DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024727 Cdc5l-201 protein_coding Mus_musculus 0 3345
ENSMUST00000178998 Gm9049-201 processed_pseudogene Mus_musculus 0 1491
ENSMUST00000179528 Gm9045-201 processed_pseudogene Mus_musculus 0 1491
ENSMUST00000177762 Gm9040-201 processed_pseudogene Mus_musculus 0 1485
ENSMUST00000179851 Gm9044-201 processed_pseudogene Mus_musculus 0 1485
ENSMUST00000177744 Gm9048-201 processed_pseudogene Mus_musculus 0 1469
ENSMUST00000177572 Gm9046-201 processed_pseudogene Mus_musculus 0 1463

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