C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371984 POMGNT1-001 ENSG00000085998 9606 - 1:46188683-46198443 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371984 6.362±0.00 14.801±0.00 1.007±0.00 12.173±6.40 9.583±8.09 3.877±2.88 20.221±17.71 15.209±13.51 8.162±6.72 6.608±6.12 15.542±11.66 12.375±7.43 21.932±4.49 14.525±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N5 CIL_0001N5_0001 CGP 1:46188682-46221261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0006493 IDA protein O-linked glycosylation
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0047223 IDA beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106498 Pomgnt1-001 protein_coding Mus_musculus 0 3467
ENSMUST00000121052 Pomgnt1-010 protein_coding Mus_musculus 0 3408
ENSMUST00000120083 Pomgnt1-011 protein_coding Mus_musculus 0 2905
ENSMUST00000106494 Pomgnt1-003 protein_coding Mus_musculus 0 2820
ENSMUST00000106496 Pomgnt1-002 protein_coding Mus_musculus 0 2314
ENSMUST00000136855 Pomgnt1-008 retained_intron Mus_musculus 0 1958
ENSMUST00000133838 Pomgnt1-005 retained_intron Mus_musculus 0 767
ENSMUST00000151325 Pomgnt1-012 retained_intron Mus_musculus 0 440
ENSMUST00000155718 Pomgnt1-007 processed_transcript Mus_musculus 0 381
ENSMUST00000127426 Pomgnt1-006 retained_intron Mus_musculus 0 292
ENSMUST00000147612 Pomgnt1-004 processed_transcript Mus_musculus 0 250
ENSMUST00000135982 Lurap1-002 processed_transcript Mus_musculus 0.000000000000005 88

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