C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIC, polypeptide 5, 63kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372097 GTF3C5-003 ENSG00000148308 9606 + 9:133030689-133058503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000372097
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000372097 3.762±0.00 1.800±0.00 2.357±0.00 2.270±1.61 0.640±0.00 1.528±0.00 0.276±0.00 11.265±8.13 7.935±1.39 7.316±3.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VE CIL_0002VE_0002 CGP 9:133030675-133087355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IC DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IC transcription, DNA-templated
GO:0006383 IC transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113889 Gtf3c5-001 protein_coding Mus_musculus 0 1519
ENSMUST00000028157 Gtf3c5-002 protein_coding Mus_musculus 0 1435
ENSMUST00000139580 Gtf3c5-004 retained_intron Mus_musculus 0 385
ENSMUST00000150929 Gtf3c5-007 retained_intron Mus_musculus 0 377
ENSMUST00000139553 Gtf3c5-005 nonsense_mediated_decay Mus_musculus 4e-35 154

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