C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIC, polypeptide 5, 63kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372108 GTF3C5-004 ENSG00000148308 9606 + 9:133031004-133058501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372108
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372108 7.899±0.00 14.207±0.00 10.085±0.00 11.696±0.00 7.417±0.00 7.182±0.00 6.599±6.27 5.587±0.00 7.447±0.00 5.287±4.82 12.365±2.97 8.490±5.03 14.164±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VE CIL_0002VE_0002 CGP 9:133030675-133087355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IC DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006351 IC transcription, DNA-templated
GO:0006383 IC transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0035914 IEA skeletal muscle cell differentiation
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113889 Gtf3c5-001 protein_coding Mus_musculus 0 1421
ENSMUST00000028157 Gtf3c5-002 protein_coding Mus_musculus 0 1338
ENSMUST00000150929 Gtf3c5-007 retained_intron Mus_musculus 0 350
ENSMUST00000139580 Gtf3c5-004 retained_intron Mus_musculus 0 315
ENSMUST00000139553 Gtf3c5-005 nonsense_mediated_decay Mus_musculus 4e-35 154

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