C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372330 MMP9-001 ENSG00000100985 9606 + 20:46008908-46016561 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372330
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372330 4.620±0.00 20.538±0.00 14.579±13.60 1.135±0.32 0.768±0.00 0.538±0.14 0.757±0.26 7.398±4.16 0.264±0.00 3.640±1.95 6.787±1.81 1.466±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BJ CIL_0007BJ_0001 CGP 20:45948653-46016561
CIL_0006GI CIL_0006GI_0001 CGP 20:46008908-46060150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001503 IEA ossification
GO:0004222 IDA:IEA metalloendopeptidase activity
GO:0005515 IPI protein binding
GO:0005518 TAS collagen binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006508 IDA:IEA proteolysis
GO:0007566 IEA embryo implantation
GO:0008233 IEA peptidase activity
GO:0008237 IEA metallopeptidase activity
GO:0008270 TAS:IEA zinc ion binding
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030225 TAS macrophage differentiation
GO:0030574 TAS collagen catabolic process
GO:0031012 IEA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0042802 IPI identical protein binding
GO:0043065 IEA positive regulation of apoptotic process
GO:0050900 IEA leukocyte migration
GO:0051549 IMP positive regulation of keratinocyte migration
GO:0070062 IDA extracellular vesicular exosome
GO:1900122 IDA positive regulation of receptor binding
GO:2001258 IDA negative regulation of cation channel activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017881 Mmp9-001 protein_coding Mus_musculus 0 1122

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