C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin C2, fast
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103095 Tnnc2-001 ENSMUSG00000017300 10090 - 2:164777161-164779741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLungMuscleTestisENSMUST00000103095
Transcript ID Bladder Brain Breast Kidney Lung Muscle Testis
ENSMUST00000103095 10.628±1.95 0.499±0.00 905.264±262.37 80.827±1.35 168.449±2.22 12120.480±1145.65 4.839±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002L CIL_00002L_0002 CGP 2:164745983-164778822
CIL_00002K CIL_00002K_0002 CGP 2:164769898-164779967
CIL_0000IO CIL_0000IO_0002 CGP 2:164777161-164793816

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0003779 IEA actin binding
GO:0005509 IEA calcium ion binding
GO:0005861 IEA troponin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104336 tnnc2-001 protein_coding Danio_rerio 0 233
ENSDART00000144047 tnnc2-002 protein_coding Danio_rerio 0 233
ENST00000372555 TNNC2-003 protein_coding Homo_sapiens 0 699
ENST00000372557 TNNC2-001 protein_coding Homo_sapiens 0 636

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