C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372733 SDC4-001 ENSG00000124145 9606 - 20:45325288-45348424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372733 61.378±0.00 25.466±0.00 10.228±0.00 33.721±24.30 27.282±5.06 26.782±17.10 19.680±14.28 64.667±45.11 45.097±33.82 77.444±55.04 31.206±6.09 45.340±23.48 31.429±8.48 32.887±7.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003L5 CIL_0003L5_0001 CGP 20:45306851-45348424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001657 IEA ureteric bud development
GO:0001968 IEA fibronectin binding
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI protein binding
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0005925 IEA focal adhesion
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0009986 IEA cell surface
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0043034 IEA costamere
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0045121 IEA membrane raft
GO:0045860 IEA positive regulation of protein kinase activity
GO:0051496 IEA positive regulation of stress fiber assembly
GO:0051894 IEA positive regulation of focal adhesion assembly
GO:0070053 IMP thrombospondin receptor activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017153 Sdc4-001 protein_coding Mus_musculus 0.00000000004 75

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