C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras-related GTP binding C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373001 RRAGC-001 ENSG00000116954 9606 - 1:38838198-38859823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373001 19.714±0.00 8.653±0.00 0.620±0.00 6.386±3.92 15.792±14.09 5.449±3.08 5.284±3.72 6.693±4.25 1.983±0.33 6.507±5.41 2.539±2.15 7.173±4.15 12.872±2.01 8.567±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PZ CIL_0008PZ_0001 VISTA 1:38426937-39028462
CIL_0008G7 CIL_0008G7_0001 VISTA 1:38483085-39084457
CIL_0007Q3 CIL_0007Q3_0001 VISTA 1:38525828-39126769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 NAS magnesium ion binding
GO:0003924 IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005764 IDA lysosome
GO:0006184 IDA GTP catabolic process
GO:0006351 NAS transcription, DNA-templated
GO:0006915 NAS apoptotic process
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008380 NAS RNA splicing
GO:0016049 NAS cell growth
GO:0019003 IDA GDP binding
GO:0034613 ISS cellular protein localization
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046982 IPI protein heterodimerization activity
GO:0071230 ISS cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030399 Rragc-001 protein_coding Mus_musculus 0 2320
ENSMUST00000155757 Rragc-002 nonsense_mediated_decay Mus_musculus 0 1642
ENSMUST00000133445 Rragc-005 retained_intron Mus_musculus 0 977
ENSDART00000101943 rragca-001 protein_coding Danio_rerio 0 669
ENSMUST00000155454 Rragc-004 processed_transcript Mus_musculus 0 658
ENSMUST00000143635 Rragc-003 processed_transcript Mus_musculus 0 357
ENSMUST00000181410 4930535I16Rik-201 protein_coding Mus_musculus 0 348

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