C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008PZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1031 VISTA 9606 1:38426937-39028462
GeneTranscriptPositionBiotype
ENSG00000116954 (RRAGC)
Ras-related GTP binding C 		ENST00000373001 (RRAGC-001) 38838198-38859823 protein_coding
ENST00000474456 (RRAGC-002) 38839349-38848074 processed_transcript
ENST00000493015 (RRAGC-003) 38845939-38856842 processed_transcript
ENST00000496778 (RRAGC-004) 38851512-38852695 processed_transcript
ENSG00000168653 (NDUFS5)
NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) 		ENST00000372967 (NDUFS5-002) 39026318-39034636 protein_coding
ENST00000372969 (NDUFS5-001) 39026318-39034636 protein_coding
ENSG00000174574 (AKIRIN1)
akirin 1 		ENST00000372984 (AKIRIN1-005) 38991288-39004854 protein_coding
ENST00000432648 (AKIRIN1-001) 38991223-39006059 protein_coding
ENST00000446189 (AKIRIN1-004) 38991288-39004761 protein_coding
ENST00000531822 (AKIRIN1-007) 38991496-39004381 protein_coding
ENSG00000199963 (RNU6-605P)
RNA, U6 small nuclear 605, pseudogene 		ENST00000363093 (RNU6-605P-201) 38926870-38926977 snRNA
ENSG00000207466 (Y_RNA)
Y RNA 		ENST00000384735 (Y_RNA.1-768) 38950825-38950925 misc_RNA
ENSG00000214114 (MYCBP)
MYC binding protein 		ENST00000397572 (MYCBP-001) 38862964-38874105 protein_coding
ENST00000462027 (MYCBP-002) 38866964-38874495 processed_transcript
ENST00000465771 (MYCBP-007) 38864586-38872605 processed_transcript
ENST00000494695 (MYCBP-004) 38864236-38873368 processed_transcript
ENST00000495043 (MYCBP-003) 38864336-38873278 processed_transcript
ENSG00000215895 (RP11-334L9.1)
 ENST00000442006 (RP11-334L9.1-001) 38708931-38710890 processed_pseudogene
ENSG00000235549 (EIF1P2)
eukaryotic translation initiation factor 1 pseudogene 2 		ENST00000428233 (EIF1P2-001) 38958275-38958925 processed_pseudogene
ENSG00000238063 (RP11-329N22.1)
 ENST00000452971 (RP11-329N22.1-001) 38475196-38476484 lincRNA
CIL_0008PZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1031 VISTA 10090 4:123735337-124336861
GeneTranscriptPositionBiotype
ENSMUSG00000023075 (Akirin1)
akirin 1 		ENSMUST00000102636 (Akirin1-001) 123734559-123750345 protein_coding
ENSMUST00000142778 (Akirin1-003) 123737814-123743507 processed_transcript
ENSMUST00000153472 (Akirin1-002) 123738940-123750231 processed_transcript
ENSMUSG00000028646 (Rragc)
Ras-related GTP binding C 		ENSMUST00000030399 (Rragc-001) 123917446-123936997 protein_coding
ENSMUST00000133445 (Rragc-005) 123920907-123929971 retained_intron
ENSMUST00000143635 (Rragc-003) 123919087-123920991 processed_transcript
ENSMUST00000155454 (Rragc-004) 123921282-123935546 processed_transcript
ENSMUST00000155757 (Rragc-002) 123917474-123936993 nonsense_mediated_decay
ENSMUSG00000028647 (Mycbp)
c-myc binding protein 		ENSMUST00000030400 (Mycbp-001) 123904832-123912269 protein_coding
ENSMUST00000106202 (Mycbp-002) 123904914-123911076 protein_coding
ENSMUST00000137685 (Mycbp-004) 123905136-123911242 processed_transcript
ENSMUST00000147340 (Mycbp-003) 123905041-123909723 processed_transcript
ENSMUSG00000043333 (Rhbdl2)
rhomboid, veinlet-like 2 (Drosophila) 		ENSMUST00000053202 (Rhbdl2-201) 123787875-123829904 protein_coding
ENSMUST00000106204 (Rhbdl2-001) 123809914-123829904 protein_coding
ENSMUST00000124290 (Rhbdl2-004) 123787874-123811498 processed_transcript
ENSMUST00000148797 (Rhbdl2-005) 123813335-123816299 processed_transcript
ENSMUST00000150286 (Rhbdl2-002) 123798205-123810141 processed_transcript
ENSMUSG00000054304 (D130007C19Rik)
RIKEN cDNA D130007C19 gene 		ENSMUST00000067277 (D130007C19Rik-201) 123902129-123903634 pseudogene
ENSMUSG00000073761 (4933427I04Rik)
Riken cDNA 4933427I04 gene 		ENSMUST00000097896 (4933427I04Rik-201) 123859679-123863165 protein_coding
ENSMUSG00000080993 (Gm12903)
predicted gene 12903 		ENSMUST00000121015 (Gm12903-001) 123902422-123902965 processed_pseudogene
ENSMUSG00000082310 (Gm12904)
predicted gene 12904 		ENSMUST00000117451 (Gm12904-001) 123838104-123839502 processed_pseudogene
ENSMUSG00000082515 (Gm12902)
predicted gene 12902 		ENSMUST00000118389 (Gm12902-001) 123926234-123926555 processed_pseudogene
ENSMUSG00000085875 (Gm12905)
predicted gene 12905 		ENSMUST00000153814 (Gm12905-001) 123905062-123917269 antisense
ENSMUST00000163208 (Gm12905-201) 123905230-123905508 antisense
ENSMUSG00000086087 (Gm12916)
predicted gene 12916 		ENSMUST00000139012 (Gm12916-001) 124293693-124299848 lincRNA
ENSMUSG00000086275 (1700121C08Rik)
RIKEN cDNA 1700121C08 gene 		ENSMUST00000137546 (1700121C08Rik-001) 123833622-123859513 antisense
ENSMUSG00000086955 (1700021L23Rik)
RIKEN cDNA 1700021L23 gene 		ENSMUST00000153719 (1700021L23Rik-001) 124302837-124311461 lincRNA
ENSMUSG00000086978 (4933435F18Rik)
RIKEN cDNA 4933435F18 gene 		ENSMUST00000125578 (4933435F18Rik-002) 124331406-124332467 lincRNA
ENSMUST00000154878 (4933435F18Rik-001) 124326308-124332508 lincRNA
ENSMUSG00000096969 (4930535I16Rik)
RIKEN cDNA 4930535I16 gene 		ENSMUST00000181410 (4930535I16Rik-201) 123917504-123918022 protein_coding
ENSMUSG00000097337 (Gm26606)
predicted gene, 26606 		ENSMUST00000181292 (Gm26606-201) 123898633-123904842 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PZ_0001ENSG00000116954ENST00000373001ENST00000474456ENST00000493015ENST00000496778ENSG00000168653ENST00000372967ENST00000372969ENSG00000174574ENST00000372984ENST00000432648ENST00000446189ENST00000531822ENSG00000199963ENST00000363093ENSG00000207466ENST00000384735ENSG00000214114ENST00000397572ENST00000462027ENST00000465771ENST00000494695ENST00000495043ENSG00000215895ENST00000442006ENSG00000235549ENST00000428233ENSG00000238063ENST00000452971CIL_0008PZ_0002ENSMUSG00000023075ENSMUST00000102636ENSMUST00000142778ENSMUST00000153472ENSMUSG00000028646ENSMUST00000030399ENSMUST00000133445ENSMUST00000143635ENSMUST00000155454ENSMUST00000155757ENSMUSG00000028647ENSMUST00000030400ENSMUST00000106202ENSMUST00000137685ENSMUST00000147340ENSMUSG00000043333ENSMUST00000053202ENSMUST00000106204ENSMUST00000124290ENSMUST00000148797ENSMUST00000150286ENSMUSG00000054304ENSMUST00000067277ENSMUSG00000073761ENSMUST00000097896ENSMUSG00000080993ENSMUST00000121015ENSMUSG00000082310ENSMUST00000117451ENSMUSG00000082515ENSMUST00000118389ENSMUSG00000085875ENSMUST00000153814ENSMUST00000163208ENSMUSG00000086087ENSMUST00000139012ENSMUSG00000086275ENSMUST00000137546ENSMUSG00000086955ENSMUST00000153719ENSMUSG00000086978ENSMUST00000125578ENSMUST00000154878ENSMUSG00000096969ENSMUST00000181410ENSMUSG00000097337ENSMUST00000181292
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008PZ_0001ENSG00000116954ENST00000373001ENSG00000168653ENST00000372967ENST00000372969ENSG00000174574ENST00000372984ENST00000432648ENST00000446189ENST00000531822ENSG00000199963ENST00000363093ENSG00000207466ENST00000384735ENSG00000214114ENST00000397572ENST00000494695ENSG00000215895ENST00000442006ENSG00000235549ENST00000428233ENSG00000238063ENST00000452971CIL_0008PZ_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116954 ENST00000373001 19.714±0.00 8.653±0.00 0.620±0.00 6.386±3.92 15.792±14.09 5.449±3.08 5.284±3.72 6.693±4.25 1.983±0.33 6.507±5.41 2.539±2.15 7.173±4.15 12.872±2.01 8.567±0.12
ENST00000474456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168653 ENST00000372967 52.261±0.00 157.682±0.00 28.601±0.00 204.528±42.12 67.277±25.96 71.293±33.65 168.226±87.93 81.297±45.32 50.505±8.95 54.056±19.33 145.682±24.66 111.956±91.40 94.964±26.94 75.026±36.04
ENST00000372969 83.801±0.00 79.252±0.00 N/A N/A 61.767±54.43 71.293±66.81 64.080±49.01 50.887±33.61 38.209±30.73 91.307±0.00 72.840±0.00 40.850±39.93 59.568±0.00 24.997±19.49
ENSG00000174574 ENST00000372984 2.376±0.00 6.084±0.00 N/A 21.324±0.00 6.972±0.00 4.662±2.90 8.502±0.00 11.142±0.00 N/A 4.628±0.00 N/A 10.807±5.36 17.107±0.00 30.991±15.81
ENST00000432648 1.709±0.00 3.753±0.00 N/A 15.144±6.59 1.898±0.42 5.614±3.88 2.458±0.00 4.711±2.71 10.437±4.04 6.389±5.31 5.435±0.00 8.693±4.88 10.451±0.25 11.545±5.83
ENST00000446189 N/A N/A 3.545±0.00 N/A 2.987±0.00 N/A N/A N/A N/A N/A 1.665±0.00 22.156±0.00 14.042±0.00 40.836±0.00
ENST00000531822 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.376±0.00 N/A N/A N/A N/A
ENSG00000199963 ENST00000363093 N/A 0.577±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.689±0.00
ENSG00000207466 ENST00000384735 0.546±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214114 ENST00000397572 3.704±0.00 2.588±0.00 N/A N/A N/A 2.961±0.84 N/A 3.328±0.00 1.038±0.00 2.198±0.00 0.371±0.00 4.488±0.00 5.838±1.10 11.670±3.19
ENST00000462027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494695 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.080±0.00 N/A N/A N/A N/A
ENST00000495043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215895 ENST00000442006 0.006±0.00 0.054±0.00 0.042±0.00 0.027±0.00 0.020±0.00 0.050±0.00 0.018±0.00 0.210±0.00 0.043±0.00 0.038±0.00 0.023±0.00 0.069±0.03 0.061±0.04 0.051±0.03
ENSG00000235549 ENST00000428233 N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.168±0.00 N/A N/A N/A N/A N/A 0.049±0.00
ENSG00000238063 ENST00000452971 N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A 0.890±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023075 ENSMUST00000102636 11.996±6.40 12.706±2.54 11.015±1.85 10.872±3.16 13.564±0.81 15.332±1.66 6.281±1.75 8.532±2.41 8.622±2.92 13.401±1.61 8.910±2.26 14.422±4.22 13.523±5.05 15.532±5.89
ENSMUST00000142778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153472 N/A 59.987±24.32 N/A N/A 14.241±3.60 13.665±0.00 N/A N/A N/A N/A N/A 9.972±2.50 N/A N/A
ENSMUSG00000028646 ENSMUST00000030399 32.832±14.20 6.367±2.08 32.380±2.44 17.317±7.87 12.788±3.39 4.697±1.34 8.706±3.16 18.209±11.36 9.675±5.70 10.605±3.41 7.180±2.06 10.304±7.89 19.410±12.63 11.996±4.70
ENSMUST00000133445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155454 N/A N/A N/A 28.110±0.00 N/A N/A N/A N/A N/A N/A N/A 44.394±0.00 77.975±32.57 24.699±0.00
ENSMUST00000155757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028647 ENSMUST00000030400 8.539±1.63 10.514±1.99 8.625±0.79 3.197±1.64 8.004±1.41 5.789±1.40 7.355±0.62 9.882±1.42 8.352±3.33 9.500±0.70 4.215±0.41 14.119±4.74 11.503±5.27 20.984±3.25
ENSMUST00000106202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137685 N/A N/A N/A 13.989±0.00 N/A N/A N/A N/A N/A N/A N/A 48.048±0.00 134.622±16.06 160.034±0.00
ENSMUST00000147340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000043333 ENSMUST00000053202 0.182±0.00 0.284±0.00 7.138±0.45 0.184±0.01 0.519±0.12 6.994±3.67 N/A 0.451±0.00 0.005±0.00 0.158±0.03 0.119±0.04 0.322±0.07 0.372±0.35 0.244±0.05
ENSMUST00000106204 0.490±0.11 0.287±0.19 N/A 0.258±0.00 0.547±0.36 12.023±5.32 0.082±0.05 0.413±0.18 0.018±0.01 0.215±0.01 0.088±0.02 0.596±0.25 0.109±0.00 0.839±0.15
ENSMUST00000124290 0.170±0.05 0.129±0.04 4.001±0.00 0.103±0.02 0.179±0.09 5.827±1.21 N/A 0.198±0.08 0.004±0.00 0.087±0.02 0.062±0.03 0.268±0.10 0.096±0.11 0.171±0.08
ENSMUST00000148797 0.298±0.00 N/A N/A 0.156±0.00 0.469±0.00 N/A 0.066±0.00 0.437±0.00 N/A 0.201±0.07 0.104±0.02 0.406±0.16 0.146±0.04 N/A
ENSMUST00000150286 N/A N/A N/A 0.901±0.00 N/A N/A N/A N/A 0.110±0.00 0.284±0.00 N/A 3.171±0.00 1.985±0.00 2.207±0.00
ENSMUSG00000054304 ENSMUST00000067277 0.289±0.09 0.828±0.16 0.440±0.03 0.533±0.31 0.381±0.17 0.254±0.06 0.173±0.03 0.279±0.08 0.138±0.06 0.233±0.07 0.468±0.19 0.817±0.32 0.428±0.20 0.391±0.22
ENSMUSG00000073761 ENSMUST00000097896 0.243±0.11 0.168±0.06 0.191±0.14 0.127±0.04 0.399±0.14 0.310±0.17 0.146±0.05 0.203±0.07 0.177±0.11 0.266±0.06 0.080±0.02 0.344±0.16 1.894±1.48 32.482±6.55
ENSMUSG00000080993 ENSMUST00000121015 1.050±0.35 1.586±0.53 0.571±0.18 1.302±0.74 1.045±0.87 0.338±0.11 0.381±0.16 0.613±0.25 0.368±0.18 0.447±0.28 0.131±0.00 2.011±1.25 0.744±0.26 0.920±0.13
ENSMUSG00000082310 ENSMUST00000117451 N/A N/A 0.026±0.00 0.011±0.00 N/A N/A N/A N/A N/A 0.025±0.00 N/A 0.067±0.00 N/A 3.835±1.60
ENSMUSG00000082515 ENSMUST00000118389 N/A 0.903±0.00 0.054±0.00 0.900±0.00 1.330±0.00 N/A N/A 0.725±0.00 0.291±0.15 0.776±0.12 0.350±0.11 1.993±0.80 1.093±0.66 0.436±0.15
ENSMUSG00000085875 ENSMUST00000153814 N/A 3.667±0.97 N/A N/A 1.441±0.20 1.328±0.31 N/A N/A N/A N/A N/A 2.989±0.44 N/A N/A
ENSMUST00000163208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086087 ENSMUST00000139012 0.056±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.02
ENSMUSG00000086275 ENSMUST00000137546 N/A N/A 0.077±0.00 N/A N/A 0.106±0.00 0.051±0.00 N/A N/A N/A N/A 0.050±0.01 0.008±0.00 8.399±0.22
ENSMUSG00000086955 ENSMUST00000153719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.479±0.00
ENSMUSG00000086978 ENSMUST00000125578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.268±0.42
ENSMUST00000154878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00
ENSMUSG00000096969 ENSMUST00000181410 N/A 21.687±11.59 N/A N/A 18.003±0.00 11.598±2.56 N/A 10.604±0.00 5.354±0.44 9.810±0.00 N/A 17.761±4.15 N/A N/A
ENSMUSG00000097337 ENSMUST00000181292 N/A N/A 1.211±0.00 1.500±0.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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