C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic component 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000156255 AGO1-001 ENSDARG00000092644 7955 - 16:54642280-54708191 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverENSDART00000156255
Transcript ID Brain Heart Liver
ENSDART00000156255 0.177±0.00 0.293±0.00 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JR CIL_0002JR_0001 CGP 16:54559833-54708191

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044113 Ago2-001 protein_coding Mus_musculus 0 1352
ENSMUST00000097888 Ago1-001 protein_coding Mus_musculus 0 1997
ENSMUST00000117257 Gm6088-001 processed_pseudogene Mus_musculus 0 850
ENSMUST00000127800 Ago1-002 nonsense_mediated_decay Mus_musculus 0 1670
ENSMUST00000176315 Ago1-005 protein_coding Mus_musculus 0 1299
ENST00000373204 AGO1-002 protein_coding Homo_sapiens 0 1997
ENST00000373206 AGO1-001 protein_coding Homo_sapiens 0 1993
ENST00000373210 AGO4-001 protein_coding Homo_sapiens 0 856

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