C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRB10 interacting GYF protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373563 GIGYF2-006 ENSG00000204120 9606 + 2:232697307-232858612 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373563
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373563 8.751±0.00 3.622±0.00 4.531±0.11 2.832±0.00 2.361±1.31 3.020±1.20 12.267±0.00 2.447±0.84 4.488±2.91 6.182±3.00 3.692±1.73 7.550±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HW CIL_0003HW_0001 CGP 2:232606057-232858627
CIL_0003HP CIL_0003HP_0001 CGP 2:232697299-232858627

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0017148 IMP negative regulation of translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027475 Gigyf2-001 protein_coding Mus_musculus 0 4918
ENSMUST00000172794 Gigyf2-002 protein_coding Mus_musculus 0 4765
ENSMUST00000174501 Gigyf2-014 protein_coding Mus_musculus 0 4704
ENSMUST00000172964 Gigyf2-006 nonsense_mediated_decay Mus_musculus 0 4161
ENSMUST00000173173 Gigyf2-009 protein_coding Mus_musculus 0 3389
ENSMUST00000173235 Gigyf2-013 nonsense_mediated_decay Mus_musculus 0 2880
ENSMUST00000164992 Gigyf2-005 protein_coding Mus_musculus 0 2146
ENSMUST00000174671 Gigyf2-007 processed_transcript Mus_musculus 0 1459
ENSMUST00000173850 Gigyf2-010 processed_transcript Mus_musculus 0 911
ENSMUST00000172736 Gigyf2-020 protein_coding Mus_musculus 0 795
ENSMUST00000173636 Gigyf2-019 protein_coding Mus_musculus 0 636
ENSMUST00000174535 Gigyf2-003 processed_transcript Mus_musculus 0 606
ENSMUST00000173152 Gigyf2-021 protein_coding Mus_musculus 0 560
ENSMUST00000174605 Gigyf2-016 retained_intron Mus_musculus 0 531
ENSMUST00000173663 Gigyf2-022 protein_coding Mus_musculus 0 372
ENSMUST00000174334 Gigyf2-004 protein_coding Mus_musculus 0 363
ENSMUST00000174482 Gigyf2-017 retained_intron Mus_musculus 0 339
ENSMUST00000174846 Gigyf2-011 processed_transcript Mus_musculus 0 276
ENSMUST00000172776 Gigyf2-018 retained_intron Mus_musculus 0 270
ENSMUST00000172976 Gigyf2-015 retained_intron Mus_musculus 0 219

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