C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dorsal root ganglia homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374139 DRGX-001 ENSG00000165606 9606 - 10:49364181-49395451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungOvaryTestisENST00000374139
Transcript ID Brain Breast Lung Ovary Testis
ENST00000374139 0.129±0.00 0.017±0.00 0.091±0.00 0.060±0.00 0.048±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OS CIL_0007OS_0001 UCNEbase 10:48836195-49372114
CIL_0008ZL CIL_0008ZL_0001 VISTA 10:48905403-49506260
CIL_00084A CIL_00084A_0001 VISTA 10:49095759-49697208

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0007409 IEA axonogenesis
GO:0007411 IEA axon guidance
GO:0009593 IEA detection of chemical stimulus
GO:0016048 IEA detection of temperature stimulus
GO:0021516 IEA dorsal spinal cord development
GO:0021559 IEA trigeminal nerve development
GO:0030182 IEA neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0050954 IEA sensory perception of mechanical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186452 Prrxl1-003 protein_coding Mus_musculus 0 1099
ENSMUST00000189022 Prrxl1-002 protein_coding Mus_musculus 0 1099
ENSMUST00000068938 Prrxl1-004 protein_coding Mus_musculus 0 682
ENSMUST00000187377 Prrxl1-001 protein_coding Mus_musculus 0 682

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