C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 57
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374343 TMEM57-001 ENSG00000204178 9606 + 1:25430920-25500209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374343 6.211±0.00 5.647±0.00 2.088±0.00 4.561±1.39 3.912±0.84 3.255±1.57 2.442±1.30 6.665±0.84 8.296±4.94 3.425±0.23 12.664±10.57 6.472±1.20 4.918±0.22 17.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Q4 CIL_0003Q4_0002 CGP 1:25362249-25500209
CIL_0003Q1 CIL_0003Q1_0003 CGP 1:25430858-25568886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0007420 IEA brain development
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030424 IEA axon
GO:0031965 ISS nuclear membrane
GO:0043005 IEA neuron projection
GO:0044306 ISS neuron projection terminus
GO:0045202 ISS synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030628 Tmem57-001 protein_coding Mus_musculus 0 3413
ENSMUST00000137707 Tmem57-004 nonsense_mediated_decay Mus_musculus 0 1351
ENSMUST00000148595 Tmem57-003 nonsense_mediated_decay Mus_musculus 0 760
ENSMUST00000150031 Tmem57-005 processed_transcript Mus_musculus 0 725
ENSMUST00000136113 Tmem57-002 retained_intron Mus_musculus 0 538

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